Detail information of Os03g0297100_circ_ag.4


General Information
CircRNA Name Os03g0297100_circ_ag.4
ID in PlantcircBase osa_circ_019363
Alias Os_ciR2934
Organism Oryza sativa
Position chr3: 10394254-10398593  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0297100_circ_ag.1 Os03g0297100_circ_ag.2 Os03g0297100_circ_ag.3 Os03g0297100_circ_g.1 Os03g0297100_circ_ag.2 Os03g0297100_circ_g.3 Os03g0297100_circ_g.4 Os03g0297100_circ_ag.5
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGGCTGTGGTGATTCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAAAATCCATGTCAGG
CTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAGgctgtggtgatccacgtgccgtaccgtc
tgcgcaaggcattcaagaaaatccatgtcaggcttgtcagggagctcgagaagaagttcagcgg
caaggtca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGTGGTGATCCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAAAATCCATGTCAGGCTTG
TCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAGGTCAATTACGTCTTTCCCATTTGTCTACTGTG
TTGCATAGGTCGCATGCTAGGAGTTCAATTTACTAACTCATAATACATTGTTGTTAGTTCTTAA
TGTTGCGTGTCGGGGCGCAAAACCTGTAGCTTATGTTGTTCATGCTTAACATGCAACGTAGATA
CTGTTAGTTTGGTTGAAGATAAAATGTTACCCTTTTAGCGCTGAATTTGTAATATCATACTGTT
GATATAACTGCTAACATCTTGGAGAACATACACGGTATTGCAAGCACCGTTTGTAAGGCTGCGA
CCTGAGCATTTTCCATTCATCTACTAGCATAGTACTGGCTTTCTATATCGACACTGAAGTGTCT
GATGTACACATGTAGTGGTTAACTGGCCTGGGGGTATCATCTTAAGTTACTCTGAGGATACCAT
CGAAGGGTAAACATCAATTTGTGTTGCTTACGAAATCCTGGCATTTTTGTTTTTTAACCTTGTT
TCATGCACGACAGACTTCTTAATTTGTGTTATATTTGTATGACCTTGGTGTCAGTTTGTTGTTA
CCATTCTCTGAACAAGTTACTATTACTTGACTATTTGTGTTGATATTGTATGTTAAACTACAAA
CAGGATGTGGTAATTGTTGCAACAAGGAGGATTGTGAGGCCTCCCAAGAAGGGCTCGGCTGTTC
AGCGCCCTCGCACAAGAACTCTTACTGCTGTTCATGATGGTATCTTGGAGGATGTAGTCTACCC
AGCTGAGATTGTTGGCAAGCGCATCAGATACCGTCTGGATGGTGCCAAGGTCATCAAGGTAGAT
GCTACAAACTTGTGTCCCTTCTAAATTGTCATTTTAATATTTTATATTGTGCTCATCTGTCACT
GCATGTACTCTCTACCAGCTACATCAGCTTCTCCACTATAATTTGCAAAAACTGAAATCATTGA
TGTTTTTTTTTCCTCATGTACAATGGGCTTGTTGTAAGCCTGTAACTAATCCTGCAGCATGACA
CTTCTGTTTGCTAGGTTAGTATTGACCCATGTGTTTTGATGTGTTTTCAGATTTTCTTGGACCC
AAAGGAGCGCAACAATACCGAATACAAGCTCGAGACCTTCTCCGCGGTCTACCGCAGGCTTTGT
GGGAAAGATGTTGCCTTTGAGTACCCTATGACTGAAACTGCTTGAAGATGCATTCCTTGGATTG
TTCCCAATGTATTCCAGAAATCATAGTTTTGATGCCAAAGTTGGTACTTGGGTATTTGTTACTT
TGAGACGACAAATCGACTTGAACAATGTTAAAGTTTTGGGCATTTAAATTATAGACCTTTGCTT
TGGCACGGTTAGCTTGTTTCAATCCATTGTTTGTTGTGGAATTAGTTTTCACTTATGTGGTAGG
GGAAGAATCTCATTATGACCGCCTATTTCATTTTTTTTGCTCCAGCTACTCGTTATCTGTTACC
TTAGTCATTTAATCGTTGTTTTGTTGGGCCTCCTGCTTGCATCCGTTTTGTCGTTTGATCTCTT
GAGAGCGGCCAGGCTTATGAAAAAACACCCTCGTATTAAAGAGGAACGTCACGCCGTTATCGTT
TTTTTGGATTGAGAAATGGAAAAATAGTAAATCTGCATATTGTAAAAATAAGGGCTATTTGATT
CGTAGGGTACAATCAAACGGCTGTATTTAGAATTGTGTTTTTCTTATTGATTTGTTCTTTTTTC
ATTCCTTCGTTTTCATTCTTTTTTTTTCTCGCAGTCTGATCAAATGTCTGTTTAGAATTATGTT
TTTTTCTATTTTTTCACATTTTAAGAGGGGGTGTCATATCTGGTATCGTGGGTAGGTTCCGGGG
TATGAATCAGTTATGGGAGTCAAAGTGGACTTATTCCTACGGAGTAACCCTCTAGAGCACAAGT
CACGGCCCAAAGGAGGTCGAAGGCCCATTTTCCGAAATGGAATAAGTCCTATTTGCCCCCCTGA
ACACATGCCCCTAGTTGAATCATATCTCTCAACCGTAAAACCGAGTATAACCAGTCCCCCGTCT
TTCAAAGTTTTGTGCTACATGCCACTTACGTGGTAGGTTAACTTGGTCTTCATCCCATGTGACG
CTTACGTGGCATTAAAATAAAACAAACTTAAATGGGGCCCACATGGCAGTCAGTAAAACAATTA
AAAAAATTCAGACCTACTTGTCAGTTACCCTTTCTCTCTCTAATGTGAATGGCGGCTGCAGCGA
CGAGTGAGATGGAGGGGCTTGCCTATCGTGGTGCATGGGTGGGGAGGAATCAGTTGCCACGGCG
CGCGCGCGCGGGTGTGTGTGTGGGGGGGGGGGTTGCCATTCACGGCGCTCCGCGAGCTCAACGG
CCACAGCACACGCACGGCGAGGACTCGCCTGCCACAGCACGCAAGGGGGAGGGCTTGCCGGTCG
CAACACAAGCGGGGCAGGGGCTCGTCGACCTCTGACTCCACCTCCCGAATCGGCGAGACAACGC
GACAGCCACGTAAATCCGACAGCGCAGCGGCGGTCCTATTTCTATTCTCCCCCCAATCCCCACA
CTCTCTCCCCTCGCCGCCTTCTCATCATAGCAGGGCGGCAAACGGTGGCGGCTGTGGCTATAAA
CAACATCCACCAAGGAGATGATGACGAACGAGCTCAGGGAAAGCTAGAATAGCGTCAACATGGC
TCGGCAACAGCGTCTCCGATGCTAAGTCGCCAAGAACAAGCACCTCCCTGCTCCCTGGTCGAAG
AGGAGTGCTTGTTGCCAGCTGTTGTCGCTCCTCTTCGCTGTTGTGCCGCCCGCGAGAAGATGGA
GTGTCTCTATTGCCGCTGATGGGTTGTATGACGCTCGGAGATGCCCAACGCCTCACCGCCGCTT
GGACCAACCATGGCATGGCTGGATCCCACCACTAGGTCCGAGCCTCTGTTTGGCGGCATAAGAG
AGAAGGAGAGATCCAGTGGTCGTAGAGGCGGTCGGGGTGGTCGTGCACGAGAGGGAATTTCCAG
CGCTGAAGCCGGTGTGGGTGCACGATACCATTGGCCTGCTCCTGTCCTGAGTCAGCACTAGAGA
GGTAGCAACAGCACTAGAACACCCTCCCGCCACTGATGGCCCCGAGAGAGAGAGAGGGGGGGAT
GGAGGGAGGGAGAAAGGATGGGAGGAGCCGCCGGTGCCCTCCGAGTCTCCGACTCGTCGCTGTC
GGCCCGCTGCCACCCTCTCAGCAGACTTGAGCTGCTGCTGGAAACTTGAGGAGAGGAAGATGCA
AGGGAGGAAAGAGGGAAGAGATTGGTGAGAAGATGAGTGGAGACTTACATTTGGGCCCCACATG
CTAACTTAGCCGATTGATCAGGTCAATGAGCCACGTCAGCGAAAACCCCCATCCAATACTGTTG
AGGGAGTCAATTTGCAATGGTTTTATGAGTTGGAGGATGGGTTATACTCGGTGCAGTTGAGTAA
TGCGATTCAACCACGGGCATGAATTGAAGGATGCAGATTAGACTTATTGCCAGGCTAGAGAGCT
CACAGCCTGCTGGCCCAACGATGCGATGCCTAGGGTTTATAAGAACACTTCCTGGCCACCCCCT
CCGCCGCCTCCGAATCGTAGCGCCGGCGCTGCCACTTCCCTCGCTCTCGCATCTTCTCCTCGCG
CCCAGGTATCTCTCTCTCTCCATCTATGCCTCAAATCCGCACGACGCTATAATTCGTCTTCTTC
GCTCGGTTTGCTTGATTGCTGATCTGACCTTGTGTGTGTGTGCGTCTCTGGGGATCGAATCTTG
CGGCAGGGGCCAGGTAAGCGAAGATGTACACCGCGAGGAAGAAGATCCAGAAGGAGAAGGGCCT
CGAGCCCTCCGAGTTCGAGGACTCCGTCGCGCAGGTGAGACCCGCTGCTCTTTGCTTTTGAGAT
GGGTCGAGGAGTGGTTTGCTTATGGCGGCTGTTGTCTTGTGTAGGCTTTCTTTGACCTCGAGAA
TGGCAACCAGGAGCTCAAGAGCGAGCTCAAGGACCTGTACATCAACAATGCAGTGTAAGTGTGC
CTGTTCTCTCCATGCAAACCTCACTCCCGGTCCCGGCCGATTGTTCGTGAGCAGTATATTCGTT
TTGATGGTTAGTTAGTGCAATGTGTGATGTGGTTGCGGATTTGTGTGGTTGTGCAGCCAGATGG
ATATTGCCGGGAACAGGAAGGCTGTGGTGATTCACGTGCCGTACCGTCTGCGCAAGGCATTCAA
GAAAATCCATGTCAGGCTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.753035678
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015