Plant Circular RNA Database

Detail information of Os03g0297100_circ_ag.2

			
						 General Information
					
						CircRNA Name
						Os03g0297100_circ_ag.2
					
						ID in PlantcircBase
						osa_circ_019365
					
						Alias
						Os_ciR13
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 10394961-10398593  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRI, find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os03g0297100_circ_ag.1 Os03g0297100_circ_ag.2 Os03g0297100_circ_ag.3 Os03g0297100_circ_ag.4 Os03g0297100_circ_g.1 Os03g0297100_circ_g.3 Os03g0297100_circ_g.4 Os03g0297100_circ_ag.5 						
					
						Support reads
						10501/206
					
						Tissues
						root/anther, seed, pistil
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os03g0297100_circ_ag.2
ID in PlantcircBase	osa_circ_019365
Alias	Os_ciR13
Organism	Oryza sativa
Position	chr3: 10394961-10398593 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	CIRI, find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os03g0297100_circ_ag.1 Os03g0297100_circ_ag.2 Os03g0297100_circ_ag.3 Os03g0297100_circ_ag.4 Os03g0297100_circ_g.1 Os03g0297100_circ_g.3 Os03g0297100_circ_g.4 Os03g0297100_circ_ag.5
Support reads	10501/206
Tissues	root/anther, seed, pistil
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAAGGCTGTGGTGATTCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAAAATCCATGTCAGG
CTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAGgatgtggtaattgttgcaacaaggagga
ttgtgaggcctcccaagaagggctcggctgttcagcgccctcgcacaagaactcttactgctgt
tcatgatg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GATGTGGTAATTGTTGCAACAAGGAGGATTGTGAGGCCTCCCAAGAAGGGCTCGGCTGTTCAGC
GCCCTCGCACAAGAACTCTTACTGCTGTTCATGATGGTATCTTGGAGGATGTAGTCTACCCAGC
TGAGATTGTTGGCAAGCGCATCAGATACCGTCTGGATGGTGCCAAGGTCATCAAGGTAGATGCT
ACAAACTTGTGTCCCTTCTAAATTGTCATTTTAATATTTTATATTGTGCTCATCTGTCACTGCA
TGTACTCTCTACCAGCTACATCAGCTTCTCCACTATAATTTGCAAAAACTGAAATCATTGATGT
TTTTTTTTCCTCATGTACAATGGGCTTGTTGTAAGCCTGTAACTAATCCTGCAGCATGACACTT
CTGTTTGCTAGGTTAGTATTGACCCATGTGTTTTGATGTGTTTTCAGATTTTCTTGGACCCAAA
GGAGCGCAACAATACCGAATACAAGCTCGAGACCTTCTCCGCGGTCTACCGCAGGCTTTGTGGG
AAAGATGTTGCCTTTGAGTACCCTATGACTGAAACTGCTTGAAGATGCATTCCTTGGATTGTTC
CCAATGTATTCCAGAAATCATAGTTTTGATGCCAAAGTTGGTACTTGGGTATTTGTTACTTTGA
GACGACAAATCGACTTGAACAATGTTAAAGTTTTGGGCATTTAAATTATAGACCTTTGCTTTGG
CACGGTTAGCTTGTTTCAATCCATTGTTTGTTGTGGAATTAGTTTTCACTTATGTGGTAGGGGA
AGAATCTCATTATGACCGCCTATTTCATTTTTTTTGCTCCAGCTACTCGTTATCTGTTACCTTA
GTCATTTAATCGTTGTTTTGTTGGGCCTCCTGCTTGCATCCGTTTTGTCGTTTGATCTCTTGAG
AGCGGCCAGGCTTATGAAAAAACACCCTCGTATTAAAGAGGAACGTCACGCCGTTATCGTTTTT
TTGGATTGAGAAATGGAAAAATAGTAAATCTGCATATTGTAAAAATAAGGGCTATTTGATTCGT
AGGGTACAATCAAACGGCTGTATTTAGAATTGTGTTTTTCTTATTGATTTGTTCTTTTTTCATT
CCTTCGTTTTCATTCTTTTTTTTTCTCGCAGTCTGATCAAATGTCTGTTTAGAATTATGTTTTT
TTCTATTTTTTCACATTTTAAGAGGGGGTGTCATATCTGGTATCGTGGGTAGGTTCCGGGGTAT
GAATCAGTTATGGGAGTCAAAGTGGACTTATTCCTACGGAGTAACCCTCTAGAGCACAAGTCAC
GGCCCAAAGGAGGTCGAAGGCCCATTTTCCGAAATGGAATAAGTCCTATTTGCCCCCCTGAACA
CATGCCCCTAGTTGAATCATATCTCTCAACCGTAAAACCGAGTATAACCAGTCCCCCGTCTTTC
AAAGTTTTGTGCTACATGCCACTTACGTGGTAGGTTAACTTGGTCTTCATCCCATGTGACGCTT
ACGTGGCATTAAAATAAAACAAACTTAAATGGGGCCCACATGGCAGTCAGTAAAACAATTAAAA
AAATTCAGACCTACTTGTCAGTTACCCTTTCTCTCTCTAATGTGAATGGCGGCTGCAGCGACGA
GTGAGATGGAGGGGCTTGCCTATCGTGGTGCATGGGTGGGGAGGAATCAGTTGCCACGGCGCGC
GCGCGCGGGTGTGTGTGTGGGGGGGGGGGTTGCCATTCACGGCGCTCCGCGAGCTCAACGGCCA
CAGCACACGCACGGCGAGGACTCGCCTGCCACAGCACGCAAGGGGGAGGGCTTGCCGGTCGCAA
CACAAGCGGGGCAGGGGCTCGTCGACCTCTGACTCCACCTCCCGAATCGGCGAGACAACGCGAC
AGCCACGTAAATCCGACAGCGCAGCGGCGGTCCTATTTCTATTCTCCCCCCAATCCCCACACTC
TCTCCCCTCGCCGCCTTCTCATCATAGCAGGGCGGCAAACGGTGGCGGCTGTGGCTATAAACAA
CATCCACCAAGGAGATGATGACGAACGAGCTCAGGGAAAGCTAGAATAGCGTCAACATGGCTCG
GCAACAGCGTCTCCGATGCTAAGTCGCCAAGAACAAGCACCTCCCTGCTCCCTGGTCGAAGAGG
AGTGCTTGTTGCCAGCTGTTGTCGCTCCTCTTCGCTGTTGTGCCGCCCGCGAGAAGATGGAGTG
TCTCTATTGCCGCTGATGGGTTGTATGACGCTCGGAGATGCCCAACGCCTCACCGCCGCTTGGA
CCAACCATGGCATGGCTGGATCCCACCACTAGGTCCGAGCCTCTGTTTGGCGGCATAAGAGAGA
AGGAGAGATCCAGTGGTCGTAGAGGCGGTCGGGGTGGTCGTGCACGAGAGGGAATTTCCAGCGC
TGAAGCCGGTGTGGGTGCACGATACCATTGGCCTGCTCCTGTCCTGAGTCAGCACTAGAGAGGT
AGCAACAGCACTAGAACACCCTCCCGCCACTGATGGCCCCGAGAGAGAGAGAGGGGGGGATGGA
GGGAGGGAGAAAGGATGGGAGGAGCCGCCGGTGCCCTCCGAGTCTCCGACTCGTCGCTGTCGGC
CCGCTGCCACCCTCTCAGCAGACTTGAGCTGCTGCTGGAAACTTGAGGAGAGGAAGATGCAAGG
GAGGAAAGAGGGAAGAGATTGGTGAGAAGATGAGTGGAGACTTACATTTGGGCCCCACATGCTA
ACTTAGCCGATTGATCAGGTCAATGAGCCACGTCAGCGAAAACCCCCATCCAATACTGTTGAGG
GAGTCAATTTGCAATGGTTTTATGAGTTGGAGGATGGGTTATACTCGGTGCAGTTGAGTAATGC
GATTCAACCACGGGCATGAATTGAAGGATGCAGATTAGACTTATTGCCAGGCTAGAGAGCTCAC
AGCCTGCTGGCCCAACGATGCGATGCCTAGGGTTTATAAGAACACTTCCTGGCCACCCCCTCCG
CCGCCTCCGAATCGTAGCGCCGGCGCTGCCACTTCCCTCGCTCTCGCATCTTCTCCTCGCGCCC
AGGTATCTCTCTCTCTCCATCTATGCCTCAAATCCGCACGACGCTATAATTCGTCTTCTTCGCT
CGGTTTGCTTGATTGCTGATCTGACCTTGTGTGTGTGTGCGTCTCTGGGGATCGAATCTTGCGG
CAGGGGCCAGGTAAGCGAAGATGTACACCGCGAGGAAGAAGATCCAGAAGGAGAAGGGCCTCGA
GCCCTCCGAGTTCGAGGACTCCGTCGCGCAGGTGAGACCCGCTGCTCTTTGCTTTTGAGATGGG
TCGAGGAGTGGTTTGCTTATGGCGGCTGTTGTCTTGTGTAGGCTTTCTTTGACCTCGAGAATGG
CAACCAGGAGCTCAAGAGCGAGCTCAAGGACCTGTACATCAACAATGCAGTGTAAGTGTGCCTG
TTCTCTCCATGCAAACCTCACTCCCGGTCCCGGCCGATTGTTCGTGAGCAGTATATTCGTTTTG
ATGGTTAGTTAGTGCAATGTGTGATGTGGTTGCGGATTTGTGTGGTTGTGCAGCCAGATGGATA
TTGCCGGGAACAGGAAGGCTGTGGTGATTCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAA
AATCCATGTCAGGCTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAG
						
					

			
		

Sequences
Splice junction sequence	GAAGGCTGTGGTGATTCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAAAATCCATGTCAGG CTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAGgatgtggtaattgttgcaacaaggagga ttgtgaggcctcccaagaagggctcggctgttcagcgccctcgcacaagaactcttactgctgt tcatgatg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GATGTGGTAATTGTTGCAACAAGGAGGATTGTGAGGCCTCCCAAGAAGGGCTCGGCTGTTCAGC GCCCTCGCACAAGAACTCTTACTGCTGTTCATGATGGTATCTTGGAGGATGTAGTCTACCCAGC TGAGATTGTTGGCAAGCGCATCAGATACCGTCTGGATGGTGCCAAGGTCATCAAGGTAGATGCT ACAAACTTGTGTCCCTTCTAAATTGTCATTTTAATATTTTATATTGTGCTCATCTGTCACTGCA TGTACTCTCTACCAGCTACATCAGCTTCTCCACTATAATTTGCAAAAACTGAAATCATTGATGT TTTTTTTTCCTCATGTACAATGGGCTTGTTGTAAGCCTGTAACTAATCCTGCAGCATGACACTT CTGTTTGCTAGGTTAGTATTGACCCATGTGTTTTGATGTGTTTTCAGATTTTCTTGGACCCAAA GGAGCGCAACAATACCGAATACAAGCTCGAGACCTTCTCCGCGGTCTACCGCAGGCTTTGTGGG AAAGATGTTGCCTTTGAGTACCCTATGACTGAAACTGCTTGAAGATGCATTCCTTGGATTGTTC CCAATGTATTCCAGAAATCATAGTTTTGATGCCAAAGTTGGTACTTGGGTATTTGTTACTTTGA GACGACAAATCGACTTGAACAATGTTAAAGTTTTGGGCATTTAAATTATAGACCTTTGCTTTGG CACGGTTAGCTTGTTTCAATCCATTGTTTGTTGTGGAATTAGTTTTCACTTATGTGGTAGGGGA AGAATCTCATTATGACCGCCTATTTCATTTTTTTTGCTCCAGCTACTCGTTATCTGTTACCTTA GTCATTTAATCGTTGTTTTGTTGGGCCTCCTGCTTGCATCCGTTTTGTCGTTTGATCTCTTGAG AGCGGCCAGGCTTATGAAAAAACACCCTCGTATTAAAGAGGAACGTCACGCCGTTATCGTTTTT TTGGATTGAGAAATGGAAAAATAGTAAATCTGCATATTGTAAAAATAAGGGCTATTTGATTCGT AGGGTACAATCAAACGGCTGTATTTAGAATTGTGTTTTTCTTATTGATTTGTTCTTTTTTCATT CCTTCGTTTTCATTCTTTTTTTTTCTCGCAGTCTGATCAAATGTCTGTTTAGAATTATGTTTTT TTCTATTTTTTCACATTTTAAGAGGGGGTGTCATATCTGGTATCGTGGGTAGGTTCCGGGGTAT GAATCAGTTATGGGAGTCAAAGTGGACTTATTCCTACGGAGTAACCCTCTAGAGCACAAGTCAC GGCCCAAAGGAGGTCGAAGGCCCATTTTCCGAAATGGAATAAGTCCTATTTGCCCCCCTGAACA CATGCCCCTAGTTGAATCATATCTCTCAACCGTAAAACCGAGTATAACCAGTCCCCCGTCTTTC AAAGTTTTGTGCTACATGCCACTTACGTGGTAGGTTAACTTGGTCTTCATCCCATGTGACGCTT ACGTGGCATTAAAATAAAACAAACTTAAATGGGGCCCACATGGCAGTCAGTAAAACAATTAAAA AAATTCAGACCTACTTGTCAGTTACCCTTTCTCTCTCTAATGTGAATGGCGGCTGCAGCGACGA GTGAGATGGAGGGGCTTGCCTATCGTGGTGCATGGGTGGGGAGGAATCAGTTGCCACGGCGCGC GCGCGCGGGTGTGTGTGTGGGGGGGGGGGTTGCCATTCACGGCGCTCCGCGAGCTCAACGGCCA CAGCACACGCACGGCGAGGACTCGCCTGCCACAGCACGCAAGGGGGAGGGCTTGCCGGTCGCAA CACAAGCGGGGCAGGGGCTCGTCGACCTCTGACTCCACCTCCCGAATCGGCGAGACAACGCGAC AGCCACGTAAATCCGACAGCGCAGCGGCGGTCCTATTTCTATTCTCCCCCCAATCCCCACACTC TCTCCCCTCGCCGCCTTCTCATCATAGCAGGGCGGCAAACGGTGGCGGCTGTGGCTATAAACAA CATCCACCAAGGAGATGATGACGAACGAGCTCAGGGAAAGCTAGAATAGCGTCAACATGGCTCG GCAACAGCGTCTCCGATGCTAAGTCGCCAAGAACAAGCACCTCCCTGCTCCCTGGTCGAAGAGG AGTGCTTGTTGCCAGCTGTTGTCGCTCCTCTTCGCTGTTGTGCCGCCCGCGAGAAGATGGAGTG TCTCTATTGCCGCTGATGGGTTGTATGACGCTCGGAGATGCCCAACGCCTCACCGCCGCTTGGA CCAACCATGGCATGGCTGGATCCCACCACTAGGTCCGAGCCTCTGTTTGGCGGCATAAGAGAGA AGGAGAGATCCAGTGGTCGTAGAGGCGGTCGGGGTGGTCGTGCACGAGAGGGAATTTCCAGCGC TGAAGCCGGTGTGGGTGCACGATACCATTGGCCTGCTCCTGTCCTGAGTCAGCACTAGAGAGGT AGCAACAGCACTAGAACACCCTCCCGCCACTGATGGCCCCGAGAGAGAGAGAGGGGGGGATGGA GGGAGGGAGAAAGGATGGGAGGAGCCGCCGGTGCCCTCCGAGTCTCCGACTCGTCGCTGTCGGC CCGCTGCCACCCTCTCAGCAGACTTGAGCTGCTGCTGGAAACTTGAGGAGAGGAAGATGCAAGG GAGGAAAGAGGGAAGAGATTGGTGAGAAGATGAGTGGAGACTTACATTTGGGCCCCACATGCTA ACTTAGCCGATTGATCAGGTCAATGAGCCACGTCAGCGAAAACCCCCATCCAATACTGTTGAGG GAGTCAATTTGCAATGGTTTTATGAGTTGGAGGATGGGTTATACTCGGTGCAGTTGAGTAATGC GATTCAACCACGGGCATGAATTGAAGGATGCAGATTAGACTTATTGCCAGGCTAGAGAGCTCAC AGCCTGCTGGCCCAACGATGCGATGCCTAGGGTTTATAAGAACACTTCCTGGCCACCCCCTCCG CCGCCTCCGAATCGTAGCGCCGGCGCTGCCACTTCCCTCGCTCTCGCATCTTCTCCTCGCGCCC AGGTATCTCTCTCTCTCCATCTATGCCTCAAATCCGCACGACGCTATAATTCGTCTTCTTCGCT CGGTTTGCTTGATTGCTGATCTGACCTTGTGTGTGTGTGCGTCTCTGGGGATCGAATCTTGCGG CAGGGGCCAGGTAAGCGAAGATGTACACCGCGAGGAAGAAGATCCAGAAGGAGAAGGGCCTCGA GCCCTCCGAGTTCGAGGACTCCGTCGCGCAGGTGAGACCCGCTGCTCTTTGCTTTTGAGATGGG TCGAGGAGTGGTTTGCTTATGGCGGCTGTTGTCTTGTGTAGGCTTTCTTTGACCTCGAGAATGG CAACCAGGAGCTCAAGAGCGAGCTCAAGGACCTGTACATCAACAATGCAGTGTAAGTGTGCCTG TTCTCTCCATGCAAACCTCACTCCCGGTCCCGGCCGATTGTTCGTGAGCAGTATATTCGTTTTG ATGGTTAGTTAGTGCAATGTGTGATGTGGTTGCGGATTTGTGTGGTTGTGCAGCCAGATGGATA TTGCCGGGAACAGGAAGGCTGTGGTGATTCACGTGCCGTACCGTCTGCGCAAGGCATTCAAGAA AATCCATGTCAGGCTTGTCAGGGAGCTCGAGAAGAAGTTCAGCGGCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012881 						
					
						PMCS
						0.708756072

Conservation Information
Conserved circRNAs	osi_circ_012881
PMCS	0.708756072

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR2919 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR2919
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0297100_circ_ag.2

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