Plant Circular RNA Database

Detail information of AT2G31810_circ_g.18

			
						 General Information
					
						CircRNA Name
						AT2G31810_circ_g.18
					
						ID in PlantcircBase
						ath_circ_015966
					
						Alias
						Ath_circ_FC1435, Ath_circ_FC5268
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 13526423-13527554  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT2G31810						
					
						Parent gene annotation
						
							Acetolactate synthase small subunit 2, chloroplastic
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT2G31810_circ_g.1 AT2G31810_circ_g.2 AT2G31810_circ_g.3 AT2G31810_circ_g.4 AT2G31810_circ_g.5 AT2G31810_circ_g.6 AT2G31810_circ_g.7 AT2G31810_circ_g.8 AT2G31810_circ_g.9 AT2G31810_circ_g.10 AT2G31810_circ_g.11 AT2G31810_circ_g.12 AT2G31810_circ_g.13 AT2G31810_circ_g.14 AT2G31810_circ_g.15 AT2G31810_circ_g.16 AT2G31810_circ_g.17 AT2G31810_circ_g.19 AT2G31810_circ_g.20 AT2G31810_circ_g.21 AT2G31810_circ_g.22 						
					
						Support reads
						2
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G31810.2:4
AT2G31810.3:4
AT2G31810.1:4

General Information
CircRNA Name	AT2G31810_circ_g.18
ID in PlantcircBase	ath_circ_015966
Alias	Ath_circ_FC1435, Ath_circ_FC5268
Organism	Arabidpsis thaliana
Position	chr2: 13526423-13527554 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT2G31810
Parent gene annotation	Acetolactate synthase small subunit 2, chloroplastic
Parent gene strand	+
Alternative splicing	AT2G31810_circ_g.1 AT2G31810_circ_g.2 AT2G31810_circ_g.3 AT2G31810_circ_g.4 AT2G31810_circ_g.5 AT2G31810_circ_g.6 AT2G31810_circ_g.7 AT2G31810_circ_g.8 AT2G31810_circ_g.9 AT2G31810_circ_g.10 AT2G31810_circ_g.11 AT2G31810_circ_g.12 AT2G31810_circ_g.13 AT2G31810_circ_g.14 AT2G31810_circ_g.15 AT2G31810_circ_g.16 AT2G31810_circ_g.17 AT2G31810_circ_g.19 AT2G31810_circ_g.20 AT2G31810_circ_g.21 AT2G31810_circ_g.22
Support reads	2
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G31810.2:4 AT2G31810.3:4 AT2G31810.1:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATTGCCGTGAACGCTGCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCAGGGCTAAA
GCTGTTGACGTATCTGATCACACAATTACTTTGCAGggagatgtttatcccgttgagccatttt
ttgaccccaaggtacatcgtattctcgacgctcactggggacttctcactgacgaagatgtaag
agagttct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 468
Transcript exons: 13526423-13526509,13526796-13526900,13526982-13527104,13
527402-13527554
GGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACT
GGGGACTTCTCACTGACGAAGATACGAGTGGACTACGGTCGCATACTCTATCATTGCTTGTAAA
TGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG
AGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAA
CAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGGTCCA
TGATCTTACTCATTTGCCATTTTCTGAAAGAGAACTGATGCTGATTAAGATTGCCGTGAACGCT
GCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCAGGGCTAAAGCTGTTGACGTATCTG
ATCACACAATTACTTTGCAG
Transcript length: 471
Transcript exons: 13526423-13526509,13526796-13526905,13526984-13527104,13
527402-13527554
GGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACT
GGGGACTTCTCACTGACGAAGATACGAGTGGACTACGGTCGCATACTCTATCATTGCTTGTAAA
TGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG
GCATACTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTG
CAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGGT
CCATGATCTTACTCATTTGCCATTTTCTGAAAGAGAACTGATGCTGATTAAGATTGCCGTGAAC
GCTGCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCAGGGCTAAAGCTGTTGACGTAT
CTGATCACACAATTACTTTGCAG
						
					

						Genomic sequence
						
							GGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACT
GGGGACTTCTCACTGACGAAGATGTAAGAGAGTTCTTTGCTATATATCTAACTTCGTGCCATGA
ATTTGCTAAAAAGCAATATGAAAAATTCAGATTGTGGTTTGCATTACACGAGTTACACTTGTTT
TTCCATTCAAGCCGTCTGGCATAATCAATTCTGTTAATATAGTTACATAAATGATAAATCAATT
GAGTGTTAGATTTGGAGACTGTATGTATTTACTTACAAAGCAGACATTGAAAGAGTTGGGGTTT
TCTTTAAGCTATTTCGTTTTATTTATCACAGTTATTCTTTTTTGATCTTTCAGACGAGTGGACT
ACGGTCGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCTTAATATTGTGACTGGT
GTTTTCGCTCGAAGGGGATACAATATCCAGGCATAGTCCTTATCTCTCTCATACACGCACACAC
AGTGTGCTTAGGTTTACTGACACACTGAAAGATCTCCTTTCTTTTAGAGCTTGGCCGTAGGACA
TGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGC
AAATTGGTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGGTGGGATTACCAAAAGCTACTG
TCTTTCTTATATATTTAACAGTTTGAATGTCTTGATGGCCCTATCATTCCTTTGCTGTCTTAGA
CCTTTTGGCTTTTTTTAAAACGTAGATTAGAGGAAGAGTTTCTGCTAAATCTTTCTGGACTTTC
CTATATCATTTCCTGGTCTTGTCTGTTTACTCGAATGAGACCTCTTGTTCCAGAAAGTCAAACT
GTACAGGCTTGATGAAAATAATTCTGAACATGATTTGCCGCAACTTTCCAAGCTGTTATTAACT
TTGTGAGGATTTTCTGCAGGTCCATGATCTTACTCATTTGCCATTTTCTGAAAGAGAACTGATG
CTGATTAAGATTGCCGTGAACGCTGCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCA
GGGCTAAAGCTGTTGACGTATCTGATCACACAATTACTTTGCAG
						
					

			
		

Sequences
Splice junction sequence	GATTGCCGTGAACGCTGCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCAGGGCTAAA GCTGTTGACGTATCTGATCACACAATTACTTTGCAGggagatgtttatcccgttgagccatttt ttgaccccaaggtacatcgtattctcgacgctcactggggacttctcactgacgaagatgtaag agagttct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 468 Transcript exons: 13526423-13526509,13526796-13526900,13526982-13527104,13 527402-13527554 GGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACT GGGGACTTCTCACTGACGAAGATACGAGTGGACTACGGTCGCATACTCTATCATTGCTTGTAAA TGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG AGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAA CAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGGTCCA TGATCTTACTCATTTGCCATTTTCTGAAAGAGAACTGATGCTGATTAAGATTGCCGTGAACGCT GCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCAGGGCTAAAGCTGTTGACGTATCTG ATCACACAATTACTTTGCAG Transcript length: 471 Transcript exons: 13526423-13526509,13526796-13526905,13526984-13527104,13 527402-13527554 GGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACT GGGGACTTCTCACTGACGAAGATACGAGTGGACTACGGTCGCATACTCTATCATTGCTTGTAAA TGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG GCATACTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTG CAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGGT CCATGATCTTACTCATTTGCCATTTTCTGAAAGAGAACTGATGCTGATTAAGATTGCCGTGAAC GCTGCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCAGGGCTAAAGCTGTTGACGTAT CTGATCACACAATTACTTTGCAG
Genomic sequence	GGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACT GGGGACTTCTCACTGACGAAGATGTAAGAGAGTTCTTTGCTATATATCTAACTTCGTGCCATGA ATTTGCTAAAAAGCAATATGAAAAATTCAGATTGTGGTTTGCATTACACGAGTTACACTTGTTT TTCCATTCAAGCCGTCTGGCATAATCAATTCTGTTAATATAGTTACATAAATGATAAATCAATT GAGTGTTAGATTTGGAGACTGTATGTATTTACTTACAAAGCAGACATTGAAAGAGTTGGGGTTT TCTTTAAGCTATTTCGTTTTATTTATCACAGTTATTCTTTTTTGATCTTTCAGACGAGTGGACT ACGGTCGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCTTAATATTGTGACTGGT GTTTTCGCTCGAAGGGGATACAATATCCAGGCATAGTCCTTATCTCTCTCATACACGCACACAC AGTGTGCTTAGGTTTACTGACACACTGAAAGATCTCCTTTCTTTTAGAGCTTGGCCGTAGGACA TGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGC AAATTGGTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGGTGGGATTACCAAAAGCTACTG TCTTTCTTATATATTTAACAGTTTGAATGTCTTGATGGCCCTATCATTCCTTTGCTGTCTTAGA CCTTTTGGCTTTTTTTAAAACGTAGATTAGAGGAAGAGTTTCTGCTAAATCTTTCTGGACTTTC CTATATCATTTCCTGGTCTTGTCTGTTTACTCGAATGAGACCTCTTGTTCCAGAAAGTCAAACT GTACAGGCTTGATGAAAATAATTCTGAACATGATTTGCCGCAACTTTCCAAGCTGTTATTAACT TTGTGAGGATTTTCTGCAGGTCCATGATCTTACTCATTTGCCATTTTCTGAAAGAGAACTGATG CTGATTAAGATTGCCGTGAACGCTGCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCA GGGCTAAAGCTGTTGACGTATCTGATCACACAATTACTTTGCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.179417168

Conservation Information
Conserved circRNAs	NA
PMCS	0.179417168

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13527444-13527551(+)
						
						Potential amino acid sequence
						
							MLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLQGDVYPVEPFFDPKVHRILDAHWGLLTD
EDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAVGHAETKGISRITTVIPATDESVS
KLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITL
QGDVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNI
QSLAVGHAETKGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIAVN
AAARRDVLDIASIFRAKAVDVSDHTITLQGDVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRS
HTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAVGHAETKGISRITTVIPATDESVSKLVQQLYK
LVDVHEVHDLTHLPFSERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLQ(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13527444-13527551(+)
Potential amino acid sequence	MLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLQGDVYPVEPFFDPKVHRILDAHWGLLTD EDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAVGHAETKGISRITTVIPATDESVS KLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITL QGDVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNI QSLAVGHAETKGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIAVN AAARRDVLDIASIFRAKAVDVSDHTITLQGDVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRS HTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAVGHAETKGISRITTVIPATDESVSKLVQQLYK LVDVHEVHDLTHLPFSERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLQ(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017;Chen et al., 2017a

circRNA

Detail information of AT2G31810_circ_g.18

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