Plant Circular RNA Database

Detail information of AT2G31810_circ_g.15

			
						 General Information
					
						CircRNA Name
						AT2G31810_circ_g.15
					
						ID in PlantcircBase
						ath_circ_015963
					
						Alias
						2:13526001-13527104
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 13526001-13527104  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G31810						
					
						Parent gene annotation
						
							Acetolactate synthase small subunit 2, chloroplastic
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT2G31810_circ_g.1 AT2G31810_circ_g.2 AT2G31810_circ_g.3 AT2G31810_circ_g.4 AT2G31810_circ_g.5 AT2G31810_circ_g.6 AT2G31810_circ_g.7 AT2G31810_circ_g.8 AT2G31810_circ_g.9 AT2G31810_circ_g.10 AT2G31810_circ_g.11 AT2G31810_circ_g.12 AT2G31810_circ_g.13 AT2G31810_circ_g.14 AT2G31810_circ_g.16 AT2G31810_circ_g.17 AT2G31810_circ_g.18 AT2G31810_circ_g.19 AT2G31810_circ_g.20 AT2G31810_circ_g.21 AT2G31810_circ_g.22 						
					
						Support reads
						1/1/1
					
						Tissues
						seedling;root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G31810.1:4
AT2G31810.3:4
AT2G31810.2:4

General Information
CircRNA Name	AT2G31810_circ_g.15
ID in PlantcircBase	ath_circ_015963
Alias	2:13526001-13527104
Organism	Arabidpsis thaliana
Position	chr2: 13526001-13527104 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G31810
Parent gene annotation	Acetolactate synthase small subunit 2, chloroplastic
Parent gene strand	+
Alternative splicing	AT2G31810_circ_g.1 AT2G31810_circ_g.2 AT2G31810_circ_g.3 AT2G31810_circ_g.4 AT2G31810_circ_g.5 AT2G31810_circ_g.6 AT2G31810_circ_g.7 AT2G31810_circ_g.8 AT2G31810_circ_g.9 AT2G31810_circ_g.10 AT2G31810_circ_g.11 AT2G31810_circ_g.12 AT2G31810_circ_g.13 AT2G31810_circ_g.14 AT2G31810_circ_g.16 AT2G31810_circ_g.17 AT2G31810_circ_g.18 AT2G31810_circ_g.19 AT2G31810_circ_g.20 AT2G31810_circ_g.21 AT2G31810_circ_g.22
Support reads	1/1/1
Tissues	seedling;root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G31810.1:4 AT2G31810.3:4 AT2G31810.2:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTG
GTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGatagcactgagaagggaaaagatgggtg
caactgctccattttggcgattttcagcagcatcctatccagatctcaaggagcaagcgcctgt
tagtgttc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 468
Transcript exons: 13526001-13526153,13526423-13526509,13526796-13526900,13
526982-13527104
ATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGCATCCT
ATCCAGATCTCAAGGAGCAAGCGCCTGTTAGTGTTCTTCGAAGTAGCAAAAAAGGAGCCATTGT
CCCTCAAAAGGAAACATCAGCAGGGGGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAG
GTACATCGTATTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGATACGAGTGGACTACGGT
CGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTT
CGCTCGAAGGGGATACAATATCCAGAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCA
CGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTTACA
AACTCGTAGATGTGCATGAG
Transcript length: 471
Transcript exons: 13526001-13526153,13526423-13526509,13526796-13526905,13
526984-13527104
ATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGCATCCT
ATCCAGATCTCAAGGAGCAAGCGCCTGTTAGTGTTCTTCGAAGTAGCAAAAAAGGAGCCATTGT
CCCTCAAAAGGAAACATCAGCAGGGGGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAG
GTACATCGTATTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGATACGAGTGGACTACGGT
CGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTT
CGCTCGAAGGGGATACAATATCCAGGCATACTTGGCCGTAGGACATGCTGAAACCAAGGGCATT
TCACGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTT
ACAAACTCGTAGATGTGCATGAG
						
					

						Genomic sequence
						
							ATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGCATCCT
ATCCAGATCTCAAGGAGCAAGCGCCTGTTAGTGTTCTTCGAAGTAGCAAAAAAGGAGCCATTGT
CCCTCAAAAGGAAACATCAGCAGGGGTGTGTGCTTCTCTGCTCCTTAGATTGTTTAACTTCAGC
TTGAAGTTCCTCACTTTCCTTTCAAAAAATTTGGTTGCATAAATTATAGTAGGTTTGGCTATTT
GATAAAGTTAAACAGAACTATAGATGCCTGTGTTTTTTTCCCTCTATGTGGTGGCTGCCTGGAA
TCAACATTTGAAGCATGCCCTTTTTTGTTTTTCTCCCTGGCTGCACTGAAGGATTTCCGAGTTT
GCTAATTTTTAAAAGTTATCTTATCTTTTTAAATGTAGGGAGATGTTTATCCCGTTGAGCCATT
TTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGATGTA
AGAGAGTTCTTTGCTATATATCTAACTTCGTGCCATGAATTTGCTAAAAAGCAATATGAAAAAT
TCAGATTGTGGTTTGCATTACACGAGTTACACTTGTTTTTCCATTCAAGCCGTCTGGCATAATC
AATTCTGTTAATATAGTTACATAAATGATAAATCAATTGAGTGTTAGATTTGGAGACTGTATGT
ATTTACTTACAAAGCAGACATTGAAAGAGTTGGGGTTTTCTTTAAGCTATTTCGTTTTATTTAT
CACAGTTATTCTTTTTTGATCTTTCAGACGAGTGGACTACGGTCGCATACTCTATCATTGCTTG
TAAATGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATAT
CCAGGCATAGTCCTTATCTCTCTCATACACGCACACACAGTGTGCTTAGGTTTACTGACACACT
GAAAGATCTCCTTTCTTTTAGAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCA
TTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTTACAAACT
CGTAGATGTGCATGAG
						
					

			
		

Sequences
Splice junction sequence	AACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTG GTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGatagcactgagaagggaaaagatgggtg caactgctccattttggcgattttcagcagcatcctatccagatctcaaggagcaagcgcctgt tagtgttc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 468 Transcript exons: 13526001-13526153,13526423-13526509,13526796-13526900,13 526982-13527104 ATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGCATCCT ATCCAGATCTCAAGGAGCAAGCGCCTGTTAGTGTTCTTCGAAGTAGCAAAAAAGGAGCCATTGT CCCTCAAAAGGAAACATCAGCAGGGGGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAG GTACATCGTATTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGATACGAGTGGACTACGGT CGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTT CGCTCGAAGGGGATACAATATCCAGAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCA CGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTTACA AACTCGTAGATGTGCATGAG Transcript length: 471 Transcript exons: 13526001-13526153,13526423-13526509,13526796-13526905,13 526984-13527104 ATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGCATCCT ATCCAGATCTCAAGGAGCAAGCGCCTGTTAGTGTTCTTCGAAGTAGCAAAAAAGGAGCCATTGT CCCTCAAAAGGAAACATCAGCAGGGGGAGATGTTTATCCCGTTGAGCCATTTTTTGACCCCAAG GTACATCGTATTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGATACGAGTGGACTACGGT CGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTT CGCTCGAAGGGGATACAATATCCAGGCATACTTGGCCGTAGGACATGCTGAAACCAAGGGCATT TCACGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTT ACAAACTCGTAGATGTGCATGAG
Genomic sequence	ATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGCATCCT ATCCAGATCTCAAGGAGCAAGCGCCTGTTAGTGTTCTTCGAAGTAGCAAAAAAGGAGCCATTGT CCCTCAAAAGGAAACATCAGCAGGGGTGTGTGCTTCTCTGCTCCTTAGATTGTTTAACTTCAGC TTGAAGTTCCTCACTTTCCTTTCAAAAAATTTGGTTGCATAAATTATAGTAGGTTTGGCTATTT GATAAAGTTAAACAGAACTATAGATGCCTGTGTTTTTTTCCCTCTATGTGGTGGCTGCCTGGAA TCAACATTTGAAGCATGCCCTTTTTTGTTTTTCTCCCTGGCTGCACTGAAGGATTTCCGAGTTT GCTAATTTTTAAAAGTTATCTTATCTTTTTAAATGTAGGGAGATGTTTATCCCGTTGAGCCATT TTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGATGTA AGAGAGTTCTTTGCTATATATCTAACTTCGTGCCATGAATTTGCTAAAAAGCAATATGAAAAAT TCAGATTGTGGTTTGCATTACACGAGTTACACTTGTTTTTCCATTCAAGCCGTCTGGCATAATC AATTCTGTTAATATAGTTACATAAATGATAAATCAATTGAGTGTTAGATTTGGAGACTGTATGT ATTTACTTACAAAGCAGACATTGAAAGAGTTGGGGTTTTCTTTAAGCTATTTCGTTTTATTTAT CACAGTTATTCTTTTTTGATCTTTCAGACGAGTGGACTACGGTCGCATACTCTATCATTGCTTG TAAATGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATAT CCAGGCATAGTCCTTATCTCTCTCATACACGCACACACAGTGTGCTTAGGTTTACTGACACACT GAAAGATCTCCTTTCTTTTAGAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCA TTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTTACAAACT CGTAGATGTGCATGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.362700044

Conservation Information
Conserved circRNAs	NA
PMCS	0.362700044

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G31810_circ_g.15

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