Detail information of Os02g0832400_circ_g.1


General Information
CircRNA Name Os02g0832400_circ_g.1
ID in PlantcircBase osa_circ_017381
Alias NA
Organism Oryza sativa
Position chr2: 35790942-35793579  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0832400
Parent gene annotation Similar to Callose synthase 1 catalytic subunit. (Os02t0832400-0
1);Similar to Callose synthase 1 catalytic subunit. (Os02t083240
0-02)
Parent gene strand +
Alternative splicing Os02g0832400_circ_g.2 Os02g0832400_circ_g.3 Os02g0832400_circ_g.4 Os02g0832400_circ_g.5 Os02g0832400_circ_g.6 Os02g0832400_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0832400-02:11
Os02t0832400-01:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTGGAATGGTGGTACACCAAGTGATATCTTTGATGCAGGAGTATTTAAACAGGTTTTGAGCA
TATTCATAACTGCTGCAATACTGAAATTGGGTCAAGtgctcaactcactaaagcttaccaaact
gctgccgtcctgtttgaggtcctcaaagccgtcaatgtctcccagaaaattgaagttgatcaag
cggtaatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1208
Transcript exons: 35790942-35791035,35791118-35791228,35791316-35791432,35
791532-35791624,35791724-35791815,35791905-35792031,3579
2509-35792646,35792724-35792827,35792944-35793037,357932
46-35793368,35793465-35793579
TGCTCAACTCACTAAAGCTTACCAAACTGCTGCCGTCCTGTTTGAGGTCCTCAAAGCCGTCAAT
GTCTCCCAGAAAATTGAAGTTGATCAAGCGATTTTGGAGACACACAACCAAGTCGAGGAAAAGA
AAAAACTTTATCTCCCTTACAACATCCTCCCGCTTGACCCTGACAGCGCTAATCAGGCTATCAT
GCGATATCCTGAGATTCAAGCTGCTTTTCACGCTCTTCGTAATACAAGAGGACTACCGTGGCCC
AAGGATCATGAAAAAAAGCCTGATGCTGATCTTCTTGGTTGGCTTCAGGCGATGTTTGGATTTC
AGAAAGATAACGTGTCCAACCAAAGGGAACACCTCATACTCTTACTTGCCAACGTCCATATAAG
GCAGATTCCCAAGCCCGACCAACAACCCAAGTTGGATGACCGAGCACTGGACACAGTCATGAAG
AAGCTATTTAAGAACTACAAGAGATGGTGCAAGTACCTTGGCCGCAAAAGCAGCTTATGGTTGC
CAACTATTCAACAAGAAGTGCAGCAGCGTAAGCTCCTCTATATGGGTCTTTATCTTCTCATCTG
GGGTGAGGCGGCTAACCTGAGATTTATGCCGGAATGTCTATGCTACATCTATCATCACATGGCT
TTTGAACTATACGGTATGTTGGCTGGAAATGTGAGTCCAACGACAGGTGAAAATGTTAAACCGG
CTTACGGTGGTGATGAAGAAGCCTTTTTGAAGAAAGTTGTGACTCCAATATACAAAGTCATCGA
GAAGGAAGCTGAAAGGAGTGAAAGTAGTGAAAGGAGCGAAAGGAGCAAGACAACAAAATCTAAG
CACTCACATTGGAGAAATTATGATGATCTAAATGAGTACTTTTGGTCAAGAGATTGTTTCAGAT
TAGGATGGCCTATGAGAGCTGATGCAGATTTTTTTAAGACCCCAGATTATGCTTATCATGATGA
AGTGAGCGGAGAGAACAGAAGAGTTGGTAGTGGCCAGTGGATGGGAAAAGTAAATTTTGTTGAG
ATAAGGTCATTTTGGCACATCTTCCGCAGCTTTGACAGGATGTGGAGCTTCTTAATTTTATCTT
TACAGGCCATGATTATAATTGCTTGGAATGGTGGTACACCAAGTGATATCTTTGATGCAGGAGT
ATTTAAACAGGTTTTGAGCATATTCATAACTGCTGCAATACTGAAATTGGGTCAAG

Genomic sequence TGCTCAACTCACTAAAGCTTACCAAACTGCTGCCGTCCTGTTTGAGGTCCTCAAAGCCGTCAAT
GTCTCCCAGAAAATTGAAGTTGATCAAGCGGTAATCTTCTTAACTATAACTTGATTATGCATTT
CTTCATTTTCTTCTTCTACTAACTTGTAATAAATAACCTCTCTTGCAGATTTTGGAGACACACA
ACCAAGTCGAGGAAAAGAAAAAACTTTATCTCCCTTACAACATCCTCCCGCTTGACCCTGACAG
CGCTAATCAGGCTATCATGCGATATCCTGAGGTTCCCATTCTTCTCAAACCCTACCTATCTTAA
TCTTACGTATCTTTTCCAACTCATTCTGCATTTTTTATTCTCCTCATTTTACAGATTCAAGCTG
CTTTTCACGCTCTTCGTAATACAAGAGGACTACCGTGGCCCAAGGATCATGAAAAAAAGCCTGA
TGCTGATCTTCTTGGTTGGCTTCAGGCGATGTTTGGATTTCAGGTAATCACACCGCCCTCAGGC
TCACCCACTAACTTAACCATTATTTTCCTTCTCTTCACCTATCTGTCACTTATTTGCAATTCAA
CTATCACTCTGCAGAAAGATAACGTGTCCAACCAAAGGGAACACCTCATACTCTTACTTGCCAA
CGTCCATATAAGGCAGATTCCCAAGCCCGACCAACAACCCAAGGTCTCACTCTTACTCAACGTC
CATATCGGTGCTTGTGTCATTCTGGTGGTGCTTGTGTCATTCTGGTGTTTACTCTTTTCTTTTT
CCTCACATTTTCAGTTGGATGACCGAGCACTGGACACAGTCATGAAGAAGCTATTTAAGAACTA
CAAGAGATGGTGCAAGTACCTTGGCCGCAAAAGCAGCTTATGGTACGATATTTAATCTAAAAAT
ACGAATATGCACAAGGTCTCTCAAGCTTGCTTGATGTATCACTATCAGATGGTCATTTCCTTTC
CAGGTTGCCAACTATTCAACAAGAAGTGCAGCAGCGTAAGCTCCTCTATATGGGTCTTTATCTT
CTCATCTGGGGTGAGGCGGCTAACCTGAGATTTATGCCGGAATGTCTATGCTACATCTATCATC
ACGTATGGCTGATCCCTTCCATTTTTCCCCTTAAAATTAGTATATGGTTTTTACCAAGCTAGTA
GGCCTGGATCTTAAAGTTGCGCAAGCTTCTTACCTGAATACCCAATGATGGTCTGGTCACAATA
AAATTGACTTATCGGACCTTTTTCTTTGTACAAAGCTATTTCCAATTTGCCATATTTGGTTTCT
ATCTACAAAGTAGTTAGCTGGATCTTAATGGAGTCCAGGCTCCAATGCTGATGATGTTCCTGGC
CATAATAACATTGACTTACCTGACAATATATGAGAGTTGCACACAGCTATTGCCATACACAAAG
AATCACATTCTGCTCACGTTGATAATATGAGGAAGCATATCTTGGATGGAATTCATCTTTCCCC
ATCATGTCAATTATGATGGGATATTTCTGTATTTGTAACTCTTGTGATGAGATTATTTTGGTGA
GTGCTGACTGTGTAATATTGTTTTCTCATAGATGGCTTTTGAACTATACGGTATGTTGGCTGGA
AATGTGAGTCCAACGACAGGTGAAAATGTTAAACCGGCTTACGGTGGTGATGAAGAAGCCTTTT
TGAAGAAAGTTGTGACTCCAATATACAAAGTCATCGAGAAGGTACCCCCCACCCCCCCAAAAAA
AGTATATCTCTGTTTCCAGCTCCATCAACTTATACACTCAAGCCTTTTACATAGGAAGCTGAAA
GGAGTGAAAGTAGTGAAAGGAGCGAAAGGAGCAAGACAACAAAATCTAAGCACTCACATTGGAG
AAATTATGATGATCTAAATGAGTACTTTTGGTAAGCACTAGCCTAATTTATTCTGAGCTACTTT
TATGAGTTTTAGTTTGTTGTTTCAAATTTATGAGCTACTTTTCTAAGGAAACCTGTGTGATTAT
TTCTGCATTTATTCTCAGGTCAAGAGATTGTTTCAGATTAGGATGGCCTATGAGAGCTGATGCA
GATTTTTTTAAGACCCCAGATTATGCTTATCATGATGAAGTGAGCGGAGTAAGTCCCTTATGAT
ACATACCTACCTATATTACTTTCATGAAGAACCTTCAGCTTAGTAATACTTCTGTTAGTATTCC
ATTCATGAATCACATAGGTGGTAAAACAGGTCTATATTATTTTTTATAACAAACCAAAACAATT
TTGTAGTATACGTCTTCATAGGGTATTCTTGGCACTGATTTTTTTTAAAAAACTTGTGGTCCAG
GAGAACAGAAGAGTTGGTAGTGGCCAGTGGATGGGAAAAGTAAATTTTGTTGAGATAAGGTCAT
TTTGGCACATCTTCCGCAGCTTTGACAGGATGTGGAGCTTCTTAATTTTATCTTTACAGGTTAA
TTGCCAATCCATGCCTTCTATTGCTCATGTTTTCTTGGTTGTATGGCTTATTAGAAAATATAAA
TGTTTGCTGTTTTTATGTTTCATGCAGGCCATGATTATAATTGCTTGGAATGGTGGTACACCAA
GTGATATCTTTGATGCAGGAGTATTTAAACAGGTTTTGAGCATATTCATAACTGCTGCAATACT
GAAATTGGGTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.234698995
Functional Information
Coding potential Y
Potential coding position 35791215-35791589(+)
Potential amino acid sequence MRYPEIQAAFHALRNTRGLPWPKDHEKKPDADLLGWLQAMFGFQKDNVSNQREHLILLLANVHI
RQIPKPDQQPKLDDRALDTVMKKLFKNYKRWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLI
WGEAANLRFMPECLCYIYHHMAFELYGMLAGNVSPTTGENVKPAYGGDEEAFLKKVVTPIYKVI
EKEAERSESSERSERSKTTKSKHSHWRNYDDLNEYFWSRDCFRLGWPMRADADFFKTPDYAYHD
EVSGENRRVGSGQWMGKVNFVEIRSFWHIFRSFDRMWSFLILSLQAMIIIAWNGGTPSDIFDAG
VFKQVLSIFITAAILKLGQVLNSLKLTKLLPSCLRSSKPSMSPRKLKLIKRFWRHTTKSRKRKN
FISLTTSSRLTLTALIRLSCDILRFKLLFTLFVIQEDYRGPRIMKKSLMLIFLVGFRRCLDFRK
ITCPTKGNTSYSYLPTSI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017