Plant Circular RNA Database

Detail information of Os02g0832400_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0832400_circ_g.2
					
						ID in PlantcircBase
						osa_circ_017382
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 35790942-35796889  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0832400						
					
						Parent gene annotation
						
							Similar to Callose synthase 1 catalytic subunit. (Os02t0832400-0
1);Similar to Callose synthase 1 catalytic subunit. (Os02t083240
0-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0832400_circ_g.1 Os02g0832400_circ_g.3 Os02g0832400_circ_g.4 Os02g0832400_circ_g.5 Os02g0832400_circ_g.6 Os02g0832400_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0832400-02:19
Os02t0832400-01:18

General Information
CircRNA Name	Os02g0832400_circ_g.2
ID in PlantcircBase	osa_circ_017382
Alias	NA
Organism	Oryza sativa
Position	chr2: 35790942-35796889 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0832400
Parent gene annotation	Similar to Callose synthase 1 catalytic subunit. (Os02t0832400-0 1);Similar to Callose synthase 1 catalytic subunit. (Os02t083240 0-02)
Parent gene strand	+
Alternative splicing	Os02g0832400_circ_g.1 Os02g0832400_circ_g.3 Os02g0832400_circ_g.4 Os02g0832400_circ_g.5 Os02g0832400_circ_g.6 Os02g0832400_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0832400-02:19 Os02t0832400-01:18

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CAGAGGATAGCAAAGAAGAGGAAAAAATAGCAGCAAGATTTGCTCAGATTTGGAATCTAATTAT
CACAAGCTTTCGTGAGGAAGATCTGATAGACAACAGtgctcaactcactaaagcttaccaaact
gctgccgtcctgtttgaggtcctcaaagccgtcaatgtctcccagaaaattgaagttgatcaag
cggtaatc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	CAGAGGATAGCAAAGAAGAGGAAAAAATAGCAGCAAGATTTGCTCAGATTTGGAATCTAATTAT CACAAGCTTTCGTGAGGAAGATCTGATAGACAACAGtgctcaactcactaaagcttaccaaact gctgccgtcctgtttgaggtcctcaaagccgtcaatgtctcccagaaaattgaagttgatcaag cggtaatc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.10778291

Conservation Information
Conserved circRNAs	NA
PMCS	0.10778291

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							35791215-35796886(+)
						
					

						Potential amino acid sequence
						
							MRYPEIQAAFHALRNTRGLPWPKDHEKKPDADLLGWLQAMFGFQKDNVSNQREHLILLLANVHI
RQIPKPDQQPKLDDRALDTVMKKLFKNYKRWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLI
WGEAANLRFMPECLCYIYHHMAFELYGMLAGNVSPTTGENVKPAYGGDEEAFLKKVVTPIYKVI
EKEAERSESSERSERSKTTKSKHSHWRNYDDLNEYFWSRDCFRLGWPMRADADFFKTPDYAYHD
EVSGENRRVGSGQWMGKVNFVEIRSFWHIFRSFDRMWSFLILSLQAMIIIAWNGGTPSDIFDAG
VFKQVLSIFITAAILKLGQAILDIILSWKARRSMSLAGKLRYILKLISAAAWVVILPVTYAYTW
ENPTGLARTIKSWLGDGQNQPSLYILAVVIYLAPNMLSAVLFLFPVLRRALERSNLKVVTFMMW
WSQPRLFVGRGMHEGAFSLFKYTMFWVLLLATKLIVSYYVEIKPLVRPTKDIMKEPIRTFQWHE
FFPHGNNNIGIVIALWAPIILVYFMDTQIWYAIFSTLIGGIYGACRRLGEIRTLGMLRSRFESL
PKAFNQRLIPSDSNKRRGIRAAFSSKPTKTPEDSKEEEKIAARFAQIWNLIITSFREEDLIDNS
AQLTKAYQTAAVLFEVLKAVNVSQKIEVDQAILETHNQVEEKKKLYLPYNILPLDPDSANQAIM
RYPEIQAAFHALRNTRGLPWPKDHEKKPDADLLGWLQAMFGFQKDNVSNQREHLILLLANVHIR
QIPKPDQQPKLDDRALDTVMKKLFKNYKRWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIW
GEAANLRFMPECLCYIYHHMAFELYGMLAGNVSPTTGENVKPAYGGDEEAFLKKVVTPIYKVIE
KEAERSESSERSERSKTTKSKHSHWRNYDDLNEYFWSRDCFRLGWPMRADADFFKTPDYAYHDE
VSGENRRVGSGQWMGKVNFVEIRSFWHIFRSFDRMWSFLILSLQAMIIIAWNGGTPSDIFDAGV
FKQVLSIFITAAILKLGQAILDIILSWKARRSMSLAGKLRYILKLISAAAWVVILPVTYAYTWE
NPTGLARTIKSWLGDGQNQPSLYILAVVIYLAPNMLSAVLFLFPVLRRALERSNLKVVTFMMWW
SQPRLFVGRGMHEGAFSLFKYTMFWVLLLATKLIVSYYVEIKPLVRPTKDIMKEPIRTFQWHEF
FPHGNNNIGIVIALWAPIILVYFMDTQIWYAIFSTLIGGIYGACRRLGEIRTLGMLRSRFESLP
KAFNQRLIPSDSNKRRGIRAAFSSKPTKTPEDSKEEEKIAARFAQIWNLIITSFREEDLIDNSA
QLTKAYQTAAVLFEVLKAVNVSQKIEVDQAILETHNQVEEKKKLYLPYNILPLDPDSANQAIMR
YPEIQAAFHALRNTRGLPWPKDHEKKPDADLLGWLQAMFGFQKDNVSNQREHLILLLANVHIRQ
IPKPDQQPKLDDRALDTVMKKLFKNYKRWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIWG
EAANLRFMPECLCYIYHHMAFELYGMLAGNVSPTTGENVKPAYGGDEEAFLKKVVTPIYKVIEK
EAERSESSERSERSKTTKSKHSHWRNYDDLNEYFWSRDCFRLGWPMRADADFFKTPDYAYHDEV
SGENRRVGSGQWMGKVNFVEIRSFWHIFRSFDRMWSFLILSLQAMIIIAWNGGTPSDIFDAGVF
KQVLSIFITAAILKLGQAILDIILSWKARRSMSLAGKLRYILKLISAAAWVVILPVTYAYTWEN
PTGLARTIKSWLGDGQNQPSLYILAVVIYLAPNMLSAVLFLFPVLRRALERSNLKVVTFMMWWS
QPRLFVGRGMHEGAFSLFKYTMFWVLLLATKLIVSYYVEIKPLVRPTKDIMKEPIRTFQWHEFF
PHGNNNIGIVIALWAPIILVYFMDTQIWYAIFSTLIGGIYGACRRLGEIRTLGMLRSRFESLPK
AFNQRLIPSDSNKRRGIRAAFSSKPTKTPEDSKEEEKIAARFAQIWNLIITSFREEDLIDNSAQ
LTKAYQTAAVLFEVLKAVNVSQKIEVDQAILETHNQVEEKKKLYLPYNILPLDPDSANQAIMRY
PEIQAAFHALRNTRGLPWPKDHEKKPDADLLGWLQAMFGFQKDNVSNQREHLILLLANVHIRQI
PKPDQQPKLDDRALDTVMKKLFKNYKRWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIWGE
AANLRFMPECLCYIYHHMAFELYGMLAGNVSPTTGENVKPAYGGDEEAFLKKVVTPIYKVIEKE
AERSESSERSERSKTTKSKHSHWRNYDDLNEYFWSRDCFRLGWPMRADADFFKTPDYAYHDEVS
GENRRVGSGQWMGKVNFVEIRSFWHIFRSFDRMWSFLILSLQAMIIIAWNGGTPSDIFDAGVFK
QVLSIFITAAILKLGQAILDIILSWKARRSMSLAGKLRYILKLISAAAWVVILPVTYAYTWENP
TGLARTIKSWLGDGQNQPSLYILAVVIYLAPNMLSAVLFLFPVLRRALERSNLKVVTFMMWWSQ
PRLFVGRGMHEGAFSLFKYTMFWVLLLATKLIVSYYVEIKPLVRPTKDIMKEPIRTFQWHEFFP
HGNNNIGIVIALWAPIILVYFMDTQIWYAIFSTLIGGIYGACRRLGEIRTLGMLRSRFESLPKA
FNQRLIPSDSNKRRGIRAAFSSKPTKTPEDSKEEEKIAARFAQIWNLIITSFREEDLIDN(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	35791215-35796886(+)
Potential amino acid sequence	MRYPEIQAAFHALRNTRGLPWPKDHEKKPDADLLGWLQAMFGFQKDNVSNQREHLILLLANVHI RQIPKPDQQPKLDDRALDTVMKKLFKNYKRWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLI WGEAANLRFMPECLCYIYHHMAFELYGMLAGNVSPTTGENVKPAYGGDEEAFLKKVVTPIYKVI EKEAERSESSERSERSKTTKSKHSHWRNYDDLNEYFWSRDCFRLGWPMRADADFFKTPDYAYHD EVSGENRRVGSGQWMGKVNFVEIRSFWHIFRSFDRMWSFLILSLQAMIIIAWNGGTPSDIFDAG VFKQVLSIFITAAILKLGQAILDIILSWKARRSMSLAGKLRYILKLISAAAWVVILPVTYAYTW ENPTGLARTIKSWLGDGQNQPSLYILAVVIYLAPNMLSAVLFLFPVLRRALERSNLKVVTFMMW WSQPRLFVGRGMHEGAFSLFKYTMFWVLLLATKLIVSYYVEIKPLVRPTKDIMKEPIRTFQWHE FFPHGNNNIGIVIALWAPIILVYFMDTQIWYAIFSTLIGGIYGACRRLGEIRTLGMLRSRFESL PKAFNQRLIPSDSNKRRGIRAAFSSKPTKTPEDSKEEEKIAARFAQIWNLIITSFREEDLIDNS AQLTKAYQTAAVLFEVLKAVNVSQKIEVDQAILETHNQVEEKKKLYLPYNILPLDPDSANQAIM RYPEIQAAFHALRNTRGLPWPKDHEKKPDADLLGWLQAMFGFQKDNVSNQREHLILLLANVHIR QIPKPDQQPKLDDRALDTVMKKLFKNYKRWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIW GEAANLRFMPECLCYIYHHMAFELYGMLAGNVSPTTGENVKPAYGGDEEAFLKKVVTPIYKVIE KEAERSESSERSERSKTTKSKHSHWRNYDDLNEYFWSRDCFRLGWPMRADADFFKTPDYAYHDE VSGENRRVGSGQWMGKVNFVEIRSFWHIFRSFDRMWSFLILSLQAMIIIAWNGGTPSDIFDAGV FKQVLSIFITAAILKLGQAILDIILSWKARRSMSLAGKLRYILKLISAAAWVVILPVTYAYTWE NPTGLARTIKSWLGDGQNQPSLYILAVVIYLAPNMLSAVLFLFPVLRRALERSNLKVVTFMMWW SQPRLFVGRGMHEGAFSLFKYTMFWVLLLATKLIVSYYVEIKPLVRPTKDIMKEPIRTFQWHEF FPHGNNNIGIVIALWAPIILVYFMDTQIWYAIFSTLIGGIYGACRRLGEIRTLGMLRSRFESLP KAFNQRLIPSDSNKRRGIRAAFSSKPTKTPEDSKEEEKIAARFAQIWNLIITSFREEDLIDNSA QLTKAYQTAAVLFEVLKAVNVSQKIEVDQAILETHNQVEEKKKLYLPYNILPLDPDSANQAIMR YPEIQAAFHALRNTRGLPWPKDHEKKPDADLLGWLQAMFGFQKDNVSNQREHLILLLANVHIRQ IPKPDQQPKLDDRALDTVMKKLFKNYKRWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIWG EAANLRFMPECLCYIYHHMAFELYGMLAGNVSPTTGENVKPAYGGDEEAFLKKVVTPIYKVIEK EAERSESSERSERSKTTKSKHSHWRNYDDLNEYFWSRDCFRLGWPMRADADFFKTPDYAYHDEV SGENRRVGSGQWMGKVNFVEIRSFWHIFRSFDRMWSFLILSLQAMIIIAWNGGTPSDIFDAGVF KQVLSIFITAAILKLGQAILDIILSWKARRSMSLAGKLRYILKLISAAAWVVILPVTYAYTWEN PTGLARTIKSWLGDGQNQPSLYILAVVIYLAPNMLSAVLFLFPVLRRALERSNLKVVTFMMWWS QPRLFVGRGMHEGAFSLFKYTMFWVLLLATKLIVSYYVEIKPLVRPTKDIMKEPIRTFQWHEFF PHGNNNIGIVIALWAPIILVYFMDTQIWYAIFSTLIGGIYGACRRLGEIRTLGMLRSRFESLPK AFNQRLIPSDSNKRRGIRAAFSSKPTKTPEDSKEEEKIAARFAQIWNLIITSFREEDLIDNSAQ LTKAYQTAAVLFEVLKAVNVSQKIEVDQAILETHNQVEEKKKLYLPYNILPLDPDSANQAIMRY PEIQAAFHALRNTRGLPWPKDHEKKPDADLLGWLQAMFGFQKDNVSNQREHLILLLANVHIRQI PKPDQQPKLDDRALDTVMKKLFKNYKRWCKYLGRKSSLWLPTIQQEVQQRKLLYMGLYLLIWGE AANLRFMPECLCYIYHHMAFELYGMLAGNVSPTTGENVKPAYGGDEEAFLKKVVTPIYKVIEKE AERSESSERSERSKTTKSKHSHWRNYDDLNEYFWSRDCFRLGWPMRADADFFKTPDYAYHDEVS GENRRVGSGQWMGKVNFVEIRSFWHIFRSFDRMWSFLILSLQAMIIIAWNGGTPSDIFDAGVFK QVLSIFITAAILKLGQAILDIILSWKARRSMSLAGKLRYILKLISAAAWVVILPVTYAYTWENP TGLARTIKSWLGDGQNQPSLYILAVVIYLAPNMLSAVLFLFPVLRRALERSNLKVVTFMMWWSQ PRLFVGRGMHEGAFSLFKYTMFWVLLLATKLIVSYYVEIKPLVRPTKDIMKEPIRTFQWHEFFP HGNNNIGIVIALWAPIILVYFMDTQIWYAIFSTLIGGIYGACRRLGEIRTLGMLRSRFESLPKA FNQRLIPSDSNKRRGIRAAFSSKPTKTPEDSKEEEKIAARFAQIWNLIITSFREEDLIDN(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0832400_circ_g.2

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