Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d012661_circ_g.1 |
ID in PlantcircBase | zma_circ_009817 |
Alias | zma_circ_0002929 |
Organism | Zea mays |
Position | chr8: 178183459-178190890 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d012661 |
Parent gene annotation |
DExH-box ATP-dependent RNA helicase DExH6 |
Parent gene strand | - |
Alternative splicing | Zm00001d012661_circ_g.2 Zm00001d012661_circ_g.3 Zm00001d012661_circ_g.4 Zm00001d012661_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d012661_T016:5 Zm00001d012661_T008:2 Zm00001d012661_T018:4 Zm00001d012661_T007:4 Zm00001d012661_T001:3 Zm00001d012661_T015:4 Zm00001d012661_T002:3 Zm00001d012661_T003:3 Zm00001d012661_T005:4 Zm00001d012661_T012:4 Zm00001d012661_T010:4 Zm00001d012661_T013:4 Zm00001d012661_T004:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.154631039 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
178190652-178183479(+) 178190827-178183504(+) 178190886-178183461(-) |
Potential amino acid sequence |
MTGKMVITCRLQNRKHILQIESFDRIGKTRDLYDRTSIEILRKTLSINCCTHEYFEKNSRC*(+ ) MTEHPLKYCEKRSASIVALMSTLKRIADARRSLKQYI*(+) MSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYLEDVLSILQSAGDNHLTSHKTEGSVLTHDFK SSMDDSINLALVNDEFDPLLELISAEQNTEVYNYQHSETGITPLMVFAMKGQLGDVCMLLSFGV DCSAQDHDGKSALDWAQQENQQEVCEVIKKHMECSSEKSTEDNELLNKYLASINPEHIDTLLIE RLLRKICVDSNEGAILVFLPGWEDISQTRERLFASPFFQDSSRFLVLSLHSMIPSSEQKKVFKR PPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHASWVSKASARQREGRA GRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIEELCLQVKLLDSNCRIADFLKKTLDPPIPET VRNAIAVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAILMNCLDPALTLACAADYRDP FVLPVAPDERKRAAAAKVELASLYGGFSDQLAVVAAFDFWRHAKDRGQDSQFCAKYFVSSNIMN MLSSMRKQLQNELSQRGFVPADASACSLNSKDPGIMRAVLMAGAYPMVGKMLPPRKNARKSVLE TASGAKVRLHPHSCNFNLSFSKSSGNPLLIYDEITRGDGGMYIKNSSVVGSYPLLLIAAEMVVA PPDDDSDEDEEDSSEDEAEESTLVQHKEEIMSSPDSIVSVVVDRWLRFDATALDVAQIYCLRER LASAILFKVLMSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYLEDVLSILQSAGDNHLTSHKT EGSVLTHDFKSSMDDSINLALVNDEFDPLLELISAEQNTEVYNYQHSETGITPLMVFAMKGQLG DVCMLLSFGVDCSAQDHDGKSALDWAQQENQQEVCEVIKKHMECSSEKSTEDNELLNKYLASIN PEHIDTLLIERLLRKICVDSNEGAILVFLPGWEDISQTRERLFASPFFQDSSRFLVLSLHSMIP SSEQKKVFKRPPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHASWVSK ASARQREGRAGRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIEELCLQVKLLDSNCRIADFLK KTLDPPIPETVRNAIAVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAILMNCLDPALT LACAADYRDPFVLPVAPDERKRAAAAKVELASLYGGFSDQLAVVAAFDFWRHAKDRGQDSQFCA KYFVSSNIMNMLSSMRKQLQNELSQRGFVPADASACSLNSKDPGIMRAVLMAGAYPMVGKMLPP RKNARKSVLETASGAKVRLHPHSCNFNLSFSKSSGNPLLIYDEITRGDGGMYIKNSSVVGSYPL LLIAAEMVVAPPDDDSDEDEEDSSEDEAEESTLVQHKEEIMSSPDSIVSVVVDRWLRFDATALD VAQIYCLRERLASAILFKVLMSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYLEDVLSILQSA GDNHLTSHKTEGSVLTHDFKSSMDDSINLALVNDEFDPLLELISAEQNTEVYNYQHSETGITPL MVFAMKGQLGDVCMLLSFGVDCSAQDHDGKSALDWAQQENQQEVCEVIKKHMECSSEKSTEDNE LLNKYLASINPEHIDTLLIERLLRKICVDSNEGAILVFLPGWEDISQTRERLFASPFFQDSSRF LVLSLHSMIPSSEQKKVFKRPPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNV STLHASWVSKASARQREGRAGRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIEELCLQVKLLD SNCRIADFLKKTLDPPIPETVRNAIAVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAI LMNCLDPALTLACAADYRDPFVLPVAPDERKRAAAAKVELASLYGGFSDQLAVVAAFDFWRHAK DRGQDSQFCAKYFVSSNIMNMLSSMRKQLQNELSQRGFVPADASACSLNSKDPGIMRAVLMAGA YPMVGKMLPPRKNARKSVLETASGAKVRLHPHSCNFNLSFSKSSGNPLLIYDEITRGDGGMYIK NSSVVGSYPLLLIAAEMVVAPPDDDSDEDEEDSSEDEAEESTLVQHKEEIMSSPDSIVSVVVDR WLRFDATALDVAQIYCLRERLASAILFKVLMSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYL EDVLSILQSAGDNHLTSHKTEGSVLTHDFKSSMDDSINLALVNDEFDPLLELISAEQNTEVYNY QHSETGITPLMVFAMKGQLGDVCMLLSFGVDCSAQDHDGKSALDWAQQENQQEVCEVIKKHMEC SSEKSTEDNELLNKYLASINPEHIDTLLIERLLRKICVDSNEGAILVFLPGWEDISQTRERLFA SPFFQDSSRFLVLSLHSMIPSSEQKKVFKRPPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMK EKSYDPYNNVSTLHASWVSKASARQREGRAGRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIE ELCLQVKLLDSNCRIADFLKKTLDPPIPETVRNAIAVLQDLGALTQDEQLTELGEKLGSLPVHP STTKMLLFAILMNCLDPALTLACAADYRDPFVLPVAPDERKRAAAAKVELASLYGGFSDQLAVV AAFDFWRHAKDRGQDSQFCAKYFVSSNIMNMLSSMRKQLQNELSQRGFVPADASACSLNSKDPG IMRAVLMAGAYPMVGKMLPPRKNARKSVLETASGAKVRLHPHSCNFNLSFSKSSGNPLLIYDEI TRGDGGMYIKNSSVVGSYPLLLIAAEMVVAPPDDDSDEDEEDSSEDEAEESTLVQHKEEIMSSP DSIVSVVVDRWLRFDATALDVAQIYCLRERLASAILFK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |