Detail information of Zm00001d012661_circ_g.1


General Information
CircRNA Name Zm00001d012661_circ_g.1
ID in PlantcircBase zma_circ_009817
Alias zma_circ_0002929
Organism Zea mays
Position chr8: 178183459-178190890  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d012661
Parent gene annotation DExH-box ATP-dependent RNA helicase DExH6
Parent gene strand -
Alternative splicing Zm00001d012661_circ_g.2 Zm00001d012661_circ_g.3 Zm00001d012661_circ_g.4 Zm00001d012661_circ_g.5
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d012661_T016:5
Zm00001d012661_T008:2
Zm00001d012661_T018:4
Zm00001d012661_T007:4
Zm00001d012661_T001:3
Zm00001d012661_T015:4
Zm00001d012661_T002:3
Zm00001d012661_T003:3
Zm00001d012661_T005:4
Zm00001d012661_T012:4
Zm00001d012661_T010:4
Zm00001d012661_T013:4
Zm00001d012661_T004:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTACTAACAGGATAGGTAAAACCAGGGACTTGTATGACCGAACATCCATTGAAATATTGCGA
AAAACGCTCAGCATCAATTGTTGCACTCATGAGTACtttgaaaagaatagcagatgctagacgt
tctcttaagcagtatatttgagcaacatccagagccgtagcgtcaaaccggagccaccgatcaa
caacaact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2220
Transcript exons: 178183459-178183958,178189030-178189588,178189730-178190
890
TTTGAAAAGAATAGCAGATGCTAGACGTTCTCTTAAGCAGTATATTTGAGCAACATCCAGAGCC
GTAGCGTCAAACCGGAGCCACCGATCAACAACAACTGAAACAATGCTGTCAGGTGAAGACATAA
TCTCTTCTTTGTGCTGTACCAATGTGCTTTCCTCAGCTTCATCCTCACTAGAATCTTCCTCATC
TTCATCACTATCATCATCAGGTGGAGCAACAACCATTTCTGCAGCTATTAGAAGCAAAGGATAT
GACCCAACAACTGAAGAATTTTTTATATACATTCCACCATCACCTCGAGTGATCTCATCGTATA
TCAGCAGTGGATTCCCAGAAGATTTACTGAAAGATAGGTTAAAGTTGCAGGAGTGTGGGTGCAG
ACGAACTTTGGCACCACTCGCTGTTTCCAGAACTGATTTTCTAGCATTTTTGCGAGGAGGGAGC
ATTTTCCCTACCATTGGGTAAGCACCAGCCATAAGAACAGCACGCATGATACCTGGATCTTTAG
AGTTTAAGCTGCAGGCAGATGCATCTGCAGGGACAAACCCTCTTTGAGACAGTTCATTCTGAAG
TTGTTTCCTCATGCTTGATAGCATATTCATGATGTTTGAAGAGACAAAGTACTTCGCACAAAAT
TGAGAATCTTGGCCTCTATCTTTGGCATGCCTCCAGAAGTCAAATGCCGCGACAACAGCAAGTT
GGTCGCTGAACCCACCATACAACGAAGCAAGCTCAACTTTCGCTGCAGCTGCCCTTTTCCTCTC
ATCAGGCGCTACTGGAAGGACAAATGGATCTCTATAATCAGCTGCACATGCCAATGTCAATGCT
GGATCCAGGCAGTTCATTAATATAGCAAACAGGAGCATCTTGGTGGTGGATGGATGGACTGGCA
GGGAACCCAGCTTTTCTCCTAATTCTGTTAGTTGTTCGTCTTGTGTTAAAGCACCAAGATCCTG
AAGCACAGCAATAGCATTTCTTACAGTTTCTGGAATTGGAGGGTCCAAGGTTTTCTTCAGAAAG
TCTGCTATTCTGCAGTTTGAATCAAGCAGTTTGACCTGCAAACAAAGTTCCTCAATGGGCATTC
TTTTTATTTCAGGAATTTGGTAGTCTGGCAAGGATGAAGCTCTAAACCTTGAGTAAAGATGATA
GCAAGTTCCTGGCTGACATCGGCCAGCACGCCCTTCGCGTTGTCTTGCACTGGCTTTTGAAACC
CAAGAAGCATGAAGTGTGGACACATTATTGTATGGATCATAACTTTTCTCTTTCATTCTCCCAC
TATCTATGACAAACACAACATCATCAATTGTCACAGCAGTCTCTGCAATATTAGTTGAGAGAAT
AATTTTACGAACCCCCACTGGTGGACGTTTGAAAACCTTTTTCTGCTCTGAGGACGGGATCATA
GAATGAAGAGACAACACAAGAAATCTTGATGAATCCTGAAAGAATGGAGAAGCAAATAATCTTT
CACGTGTTTGACTGATATCTTCCCAGCCAGGAAGGAATACCAAGATGGCTCCTTCATTGGAATC
CACACAAATTTTTCGAAGCAGCCGTTCAATTAGCAGAGTATCAATGTGCTCTGGATTAATAGAT
GCCAAGTACTTGTTAAGCAGCTCGTTATCTTCAGTTGATTTTTCTGAACTACACTCCATATGTT
TCTTTATTACTTCACAGACCTCTTGTTGATTCTCTTGTTGTGCCCAATCTAATGCGGATTTTCC
ATCATGATCCTGTGCTGAACAATCCACACCAAAAGATAAAAGCATACAGACGTCCCCAAGCTGA
CCCTTCATAGCAAAAACCATTAAAGGAGTTATACCAGTCTCTGAATGCTGGTAATTGTAGACTT
CTGTGTTCTGCTCTGCAGAAATAAGCTCAAGAAGAGGATCAAATTCATCATTGACCAAAGCCAG
ATTAATTGAATCATCCATTGAGCTTTTGAAATCGTGAGTTAAAACGCTGCCCTCTGTTTTATGA
CTGGTAAGATGGTTATCACCTGCAGACTGCAGAATAGAAAGCACATCCTCCAAATAGAAAGTTT
TGACCTGAGGGGGGAAAAAGTTATAACTTCCAAAAATAATTTCAGATCGCTTAATGTATTCAAT
CTGAGAGAGTTTACTAACAGGATAGGTAAAACCAGGGACTTGTATGACCGAACATCCATTGAAA
TATTGCGAAAAACGCTCAGCATCAATTGTTGCACTCATGAGTAC

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.154631039
Functional Information
Coding potential Y
Potential coding position 178190652-178183479(+)
178190827-178183504(+)
178190886-178183461(-)
Potential amino acid sequence MTGKMVITCRLQNRKHILQIESFDRIGKTRDLYDRTSIEILRKTLSINCCTHEYFEKNSRC*(+
)
MTEHPLKYCEKRSASIVALMSTLKRIADARRSLKQYI*(+)
MSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYLEDVLSILQSAGDNHLTSHKTEGSVLTHDFK
SSMDDSINLALVNDEFDPLLELISAEQNTEVYNYQHSETGITPLMVFAMKGQLGDVCMLLSFGV
DCSAQDHDGKSALDWAQQENQQEVCEVIKKHMECSSEKSTEDNELLNKYLASINPEHIDTLLIE
RLLRKICVDSNEGAILVFLPGWEDISQTRERLFASPFFQDSSRFLVLSLHSMIPSSEQKKVFKR
PPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHASWVSKASARQREGRA
GRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIEELCLQVKLLDSNCRIADFLKKTLDPPIPET
VRNAIAVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAILMNCLDPALTLACAADYRDP
FVLPVAPDERKRAAAAKVELASLYGGFSDQLAVVAAFDFWRHAKDRGQDSQFCAKYFVSSNIMN
MLSSMRKQLQNELSQRGFVPADASACSLNSKDPGIMRAVLMAGAYPMVGKMLPPRKNARKSVLE
TASGAKVRLHPHSCNFNLSFSKSSGNPLLIYDEITRGDGGMYIKNSSVVGSYPLLLIAAEMVVA
PPDDDSDEDEEDSSEDEAEESTLVQHKEEIMSSPDSIVSVVVDRWLRFDATALDVAQIYCLRER
LASAILFKVLMSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYLEDVLSILQSAGDNHLTSHKT
EGSVLTHDFKSSMDDSINLALVNDEFDPLLELISAEQNTEVYNYQHSETGITPLMVFAMKGQLG
DVCMLLSFGVDCSAQDHDGKSALDWAQQENQQEVCEVIKKHMECSSEKSTEDNELLNKYLASIN
PEHIDTLLIERLLRKICVDSNEGAILVFLPGWEDISQTRERLFASPFFQDSSRFLVLSLHSMIP
SSEQKKVFKRPPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHASWVSK
ASARQREGRAGRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIEELCLQVKLLDSNCRIADFLK
KTLDPPIPETVRNAIAVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAILMNCLDPALT
LACAADYRDPFVLPVAPDERKRAAAAKVELASLYGGFSDQLAVVAAFDFWRHAKDRGQDSQFCA
KYFVSSNIMNMLSSMRKQLQNELSQRGFVPADASACSLNSKDPGIMRAVLMAGAYPMVGKMLPP
RKNARKSVLETASGAKVRLHPHSCNFNLSFSKSSGNPLLIYDEITRGDGGMYIKNSSVVGSYPL
LLIAAEMVVAPPDDDSDEDEEDSSEDEAEESTLVQHKEEIMSSPDSIVSVVVDRWLRFDATALD
VAQIYCLRERLASAILFKVLMSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYLEDVLSILQSA
GDNHLTSHKTEGSVLTHDFKSSMDDSINLALVNDEFDPLLELISAEQNTEVYNYQHSETGITPL
MVFAMKGQLGDVCMLLSFGVDCSAQDHDGKSALDWAQQENQQEVCEVIKKHMECSSEKSTEDNE
LLNKYLASINPEHIDTLLIERLLRKICVDSNEGAILVFLPGWEDISQTRERLFASPFFQDSSRF
LVLSLHSMIPSSEQKKVFKRPPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNV
STLHASWVSKASARQREGRAGRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIEELCLQVKLLD
SNCRIADFLKKTLDPPIPETVRNAIAVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAI
LMNCLDPALTLACAADYRDPFVLPVAPDERKRAAAAKVELASLYGGFSDQLAVVAAFDFWRHAK
DRGQDSQFCAKYFVSSNIMNMLSSMRKQLQNELSQRGFVPADASACSLNSKDPGIMRAVLMAGA
YPMVGKMLPPRKNARKSVLETASGAKVRLHPHSCNFNLSFSKSSGNPLLIYDEITRGDGGMYIK
NSSVVGSYPLLLIAAEMVVAPPDDDSDEDEEDSSEDEAEESTLVQHKEEIMSSPDSIVSVVVDR
WLRFDATALDVAQIYCLRERLASAILFKVLMSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYL
EDVLSILQSAGDNHLTSHKTEGSVLTHDFKSSMDDSINLALVNDEFDPLLELISAEQNTEVYNY
QHSETGITPLMVFAMKGQLGDVCMLLSFGVDCSAQDHDGKSALDWAQQENQQEVCEVIKKHMEC
SSEKSTEDNELLNKYLASINPEHIDTLLIERLLRKICVDSNEGAILVFLPGWEDISQTRERLFA
SPFFQDSSRFLVLSLHSMIPSSEQKKVFKRPPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMK
EKSYDPYNNVSTLHASWVSKASARQREGRAGRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIE
ELCLQVKLLDSNCRIADFLKKTLDPPIPETVRNAIAVLQDLGALTQDEQLTELGEKLGSLPVHP
STTKMLLFAILMNCLDPALTLACAADYRDPFVLPVAPDERKRAAAAKVELASLYGGFSDQLAVV
AAFDFWRHAKDRGQDSQFCAKYFVSSNIMNMLSSMRKQLQNELSQRGFVPADASACSLNSKDPG
IMRAVLMAGAYPMVGKMLPPRKNARKSVLETASGAKVRLHPHSCNFNLSFSKSSGNPLLIYDEI
TRGDGGMYIKNSSVVGSYPLLLIAAEMVVAPPDDDSDEDEEDSSEDEAEESTLVQHKEEIMSSP
DSIVSVVVDRWLRFDATALDVAQIYCLRERLASAILFK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b