Detail information of Zm00001d012661_circ_g.2


General Information
CircRNA Name Zm00001d012661_circ_g.2
ID in PlantcircBase zma_circ_009818
Alias zma_circ_0002930
Organism Zea mays
Position chr8: 178189030-178190890  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d012661
Parent gene annotation DExH-box ATP-dependent RNA helicase DExH6
Parent gene strand -
Alternative splicing Zm00001d012661_circ_g.1 Zm00001d012661_circ_g.3 Zm00001d012661_circ_g.4 Zm00001d012661_circ_g.5
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d012661_T005:3
Zm00001d012661_T002:2
Zm00001d012661_T004:3
Zm00001d012661_T003:2
Zm00001d012661_T007:3
Zm00001d012661_T010:3
Zm00001d012661_T018:3
Zm00001d012661_T016:4
Zm00001d012661_T012:3
Zm00001d012661_T013:3
Zm00001d012661_T008:1
Zm00001d012661_T015:3
Zm00001d012661_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTACTAACAGGATAGGTAAAACCAGGGACTTGTATGACCGAACATCCATTGAAATATTGCGA
AAAACGCTCAGCATCAATTGTTGCACTCATGAGTACctggatctttagagtttaagctgcaggc
agatgcatctgcagggacaaaccctctttgagacagttcattctgaagttgtttcctcatgctt
gatagcat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1720
Transcript exons: 178189030-178189588,178189730-178190890
CTGGATCTTTAGAGTTTAAGCTGCAGGCAGATGCATCTGCAGGGACAAACCCTCTTTGAGACAG
TTCATTCTGAAGTTGTTTCCTCATGCTTGATAGCATATTCATGATGTTTGAAGAGACAAAGTAC
TTCGCACAAAATTGAGAATCTTGGCCTCTATCTTTGGCATGCCTCCAGAAGTCAAATGCCGCGA
CAACAGCAAGTTGGTCGCTGAACCCACCATACAACGAAGCAAGCTCAACTTTCGCTGCAGCTGC
CCTTTTCCTCTCATCAGGCGCTACTGGAAGGACAAATGGATCTCTATAATCAGCTGCACATGCC
AATGTCAATGCTGGATCCAGGCAGTTCATTAATATAGCAAACAGGAGCATCTTGGTGGTGGATG
GATGGACTGGCAGGGAACCCAGCTTTTCTCCTAATTCTGTTAGTTGTTCGTCTTGTGTTAAAGC
ACCAAGATCCTGAAGCACAGCAATAGCATTTCTTACAGTTTCTGGAATTGGAGGGTCCAAGGTT
TTCTTCAGAAAGTCTGCTATTCTGCAGTTTGAATCAAGCAGTTTGACCTGCAAACAAAGTTCCT
CAATGGGCATTCTTTTTATTTCAGGAATTTGGTAGTCTGGCAAGGATGAAGCTCTAAACCTTGA
GTAAAGATGATAGCAAGTTCCTGGCTGACATCGGCCAGCACGCCCTTCGCGTTGTCTTGCACTG
GCTTTTGAAACCCAAGAAGCATGAAGTGTGGACACATTATTGTATGGATCATAACTTTTCTCTT
TCATTCTCCCACTATCTATGACAAACACAACATCATCAATTGTCACAGCAGTCTCTGCAATATT
AGTTGAGAGAATAATTTTACGAACCCCCACTGGTGGACGTTTGAAAACCTTTTTCTGCTCTGAG
GACGGGATCATAGAATGAAGAGACAACACAAGAAATCTTGATGAATCCTGAAAGAATGGAGAAG
CAAATAATCTTTCACGTGTTTGACTGATATCTTCCCAGCCAGGAAGGAATACCAAGATGGCTCC
TTCATTGGAATCCACACAAATTTTTCGAAGCAGCCGTTCAATTAGCAGAGTATCAATGTGCTCT
GGATTAATAGATGCCAAGTACTTGTTAAGCAGCTCGTTATCTTCAGTTGATTTTTCTGAACTAC
ACTCCATATGTTTCTTTATTACTTCACAGACCTCTTGTTGATTCTCTTGTTGTGCCCAATCTAA
TGCGGATTTTCCATCATGATCCTGTGCTGAACAATCCACACCAAAAGATAAAAGCATACAGACG
TCCCCAAGCTGACCCTTCATAGCAAAAACCATTAAAGGAGTTATACCAGTCTCTGAATGCTGGT
AATTGTAGACTTCTGTGTTCTGCTCTGCAGAAATAAGCTCAAGAAGAGGATCAAATTCATCATT
GACCAAAGCCAGATTAATTGAATCATCCATTGAGCTTTTGAAATCGTGAGTTAAAACGCTGCCC
TCTGTTTTATGACTGGTAAGATGGTTATCACCTGCAGACTGCAGAATAGAAAGCACATCCTCCA
AATAGAAAGTTTTGACCTGAGGGGGGAAAAAGTTATAACTTCCAAAAATAATTTCAGATCGCTT
AATGTATTCAATCTGAGAGAGTTTACTAACAGGATAGGTAAAACCAGGGACTTGTATGACCGAA
CATCCATTGAAATATTGCGAAAAACGCTCAGCATCAATTGTTGCACTCATGAGTAC

Genomic sequence CTGGATCTTTAGAGTTTAAGCTGCAGGCAGATGCATCTGCAGGGACAAACCCTCTTTGAGACAG
TTCATTCTGAAGTTGTTTCCTCATGCTTGATAGCATATTCATGATGTTTGAAGAGACAAAGTAC
TTCGCACAAAATTGAGAATCTTGGCCTCTATCTTTGGCATGCCTCCAGAAGTCAAATGCCGCGA
CAACAGCAAGTTGGTCGCTGAACCCACCATACAACGAAGCAAGCTCAACTTTCGCTGCAGCTGC
CCTTTTCCTCTCATCAGGCGCTACTGGAAGGACAAATGGATCTCTATAATCAGCTGCACATGCC
AATGTCAATGCTGGATCCAGGCAGTTCATTAATATAGCAAACAGGAGCATCTTGGTGGTGGATG
GATGGACTGGCAGGGAACCCAGCTTTTCTCCTAATTCTGTTAGTTGTTCGTCTTGTGTTAAAGC
ACCAAGATCCTGAAGCACAGCAATAGCATTTCTTACAGTTTCTGGAATTGGAGGGTCCAAGGTT
TTCTTCAGAAAGTCTGCTATTCTGCAGTTTGAATCAAGCAGTTTGACCTGCAGCATGGCCAATG
TTTAAAGAAACAGCACTGAGTAACTAAAAAGTAACAAGTACTTTAATCGCAGTTCCATGAAATA
GTTCATGACATTGTTTTCATTGAATATTAGGGACAAACTAAATATAAACAAACAGCTTACCTGC
AAACAAAGTTCCTCAATGGGCATTCTTTTTATTTCAGGAATTTGGTAGTCTGGCAAGGATGAAG
CTCTAAACCTTGAGTAAAGATGATAGCAAGTTCCTGGCTGACATCGGCCAGCACGCCCTTCGCG
TTGTCTTGCACTGGCTTTTGAAACCCAAGAAGCATGAAGTGTGGACACATTATTGTATGGATCA
TAACTTTTCTCTTTCATTCTCCCACTATCTATGACAAACACAACATCATCAATTGTCACAGCAG
TCTCTGCAATATTAGTTGAGAGAATAATTTTACGAACCCCCACTGGTGGACGTTTGAAAACCTT
TTTCTGCTCTGAGGACGGGATCATAGAATGAAGAGACAACACAAGAAATCTTGATGAATCCTGA
AAGAATGGAGAAGCAAATAATCTTTCACGTGTTTGACTGATATCTTCCCAGCCAGGAAGGAATA
CCAAGATGGCTCCTTCATTGGAATCCACACAAATTTTTCGAAGCAGCCGTTCAATTAGCAGAGT
ATCAATGTGCTCTGGATTAATAGATGCCAAGTACTTGTTAAGCAGCTCGTTATCTTCAGTTGAT
TTTTCTGAACTACACTCCATATGTTTCTTTATTACTTCACAGACCTCTTGTTGATTCTCTTGTT
GTGCCCAATCTAATGCGGATTTTCCATCATGATCCTGTGCTGAACAATCCACACCAAAAGATAA
AAGCATACAGACGTCCCCAAGCTGACCCTTCATAGCAAAAACCATTAAAGGAGTTATACCAGTC
TCTGAATGCTGGTAATTGTAGACTTCTGTGTTCTGCTCTGCAGAAATAAGCTCAAGAAGAGGAT
CAAATTCATCATTGACCAAAGCCAGATTAATTGAATCATCCATTGAGCTTTTGAAATCGTGAGT
TAAAACGCTGCCCTCTGTTTTATGACTGGTAAGATGGTTATCACCTGCAGACTGCAGAATAGAA
AGCACATCCTCCAAATAGAAAGTTTTGACCTGAGGGGGGAAAAAGTTATAACTTCCAAAAATAA
TTTCAGATCGCTTAATGTATTCAATCTGAGAGAGTTTACTAACAGGATAGGTAAAACCAGGGAC
TTGTATGACCGAACATCCATTGAAATATTGCGAAAAACGCTCAGCATCAATTGTTGCACTCATG
AGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.257107199
Functional Information
Coding potential Y
Potential coding position 178190652-178189038(+)
178190827-178189045(+)
178190886-178190870(-)
Potential amino acid sequence MTGKMVITCRLQNRKHILQIESFDRIGKTRDLYDRTSIEILRKTLSINCCTHEYLDL*(+)
MTEHPLKYCEKRSASIVALMSTWIFRV*(+)
MSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYLEDVLSILQSAGDNHLTSHKTEGSVLTHDFK
SSMDDSINLALVNDEFDPLLELISAEQNTEVYNYQHSETGITPLMVFAMKGQLGDVCMLLSFGV
DCSAQDHDGKSALDWAQQENQQEVCEVIKKHMECSSEKSTEDNELLNKYLASINPEHIDTLLIE
RLLRKICVDSNEGAILVFLPGWEDISQTRERLFASPFFQDSSRFLVLSLHSMIPSSEQKKVFKR
PPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHASWVSKASARQREGRA
GRCQPGTCYHLYSRFRASSLPDYQIPEIKRMPIEELCLQVKLLDSNCRIADFLKKTLDPPIPET
VRNAIAVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAILMNCLDPALTLACAADYRDP
FVLPVAPDERKRAAAAKVELASLYGGFSDQLAVVAAFDFWRHAKDRGQDSQFCAKYFVSSNIMN
MLSSMRKQLQNELSQRGFVPADASACSLNSKDPGTHECNN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b