Detail information of Os01g0286200_circ_igg.2


General Information
CircRNA Name Os01g0286200_circ_igg.2
ID in PlantcircBase osa_circ_001377
Alias Os_ciR5683
Organism Oryza sativa
Position chr1: 10268267-10274416  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0286200_circ_igg.1
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGAATGGACAAGCAGATAAGAAAGACGCAACGCAACGCAGCGGTTGCAGCCGCAGCCCCAAGC
CCCGGGTTCCCTGCACCGCCCTCGCGTCAATCCACGgttcagaccttattatttcatgaagtgt
gcttattataatgacatagccatattatgtgtcagctcatctgatcattgttgcaatatgaagg
gtggctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_001988* osi_circ_009001
PMCS 0.198516314
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015