Detail information of Os01g0286200_circ_igg.1


General Information
CircRNA Name Os01g0286200_circ_igg.1
ID in PlantcircBase osa_circ_001376
Alias Os_ciR3492
Organism Oryza sativa
Position chr1: 10268267-10272773  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0286200_circ_igg.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTGCGTTTCGTGCTCCTGGTTCCAGATTTTCTCAATACTCCAGGTTCATCGTCAAGATCCTG
AATAGAACCAGTTTTTTATCATGAGAATCAGCGAAGgttcagaccttattatttcatgaagtgt
gcttattataatgacatagccatattatgtgtcagctcatctgatcattgttgcaatatgaagg
gtggctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCAGACCTTATTATTTCATGAAGTGTGCTTATTATAATGACATAGCCATATTATGTGTCAGC
TCATCTGATCATTGTTGCAATATGAAGGGTGGCTGCGAAGTATGGAAGGACCTTAATTCTTAAC
TATGGAATTGATTGGTCAGTAAATTGTTTTTCTCTGCGCGATACTGACATACGAGAAATGGCTT
GCTCCTTTACAAGAAAGGCCAGCAATTGTAAATGTAGAGGCACTGAAGAATCTGTCTGGCTGGT
GAGTCTGTTGAATTAAGTCTTTTTTGGTGGGACCTGTTGGATTGAATCTACTTTAATGTTTTTG
TAACTTGTTTCTTTGTATGGGATGAGTGTGGTTGGACCCGGGTGTAATAGGTGACCCATTTTAG
TTCAACTAAAACAAACTAAGTTCTAGTTTTGAACTCCTCAAAACGATATTTGGTTCATTTAGTT
GACCTAAGATGGGGTCACCTATTACCCATGTGTCGACCCGCACCCGTCTCTTGCCAGTGCCAAT
AATTCGTCACAGGTTCAGGATATGAACATATACCCTTCAACTGACTAGTGTTTAGTTGTGTCCT
TTGAACGAGTGTATCATGAAAAAACACTAGAAGTTTCCTGTAAGCAACGGCATTGGAGCATAGT
TTTCTATCTAGTCAGAGAGCTGGCTAGGAAACACACTGTACTTCTGATAACCTAATAAGTACTC
CTAATAAATATCACATCAGAAAGTTAGGATAAAGCAGTAGTTGGATCCAAAATAGTTTGGAAAT
AGAAAATTGCCATCAATGCCAGTTTCTGATGAATTAAGTTTTTGGCAATGCCAACCGAAGAGAA
CACAGTTTGTTGTAAATAGTTTTGGATGCTAAACACAATAAACATATGTAAAAGGTGCTATAAC
ATTTATTTTGTAACAATCGTGTTAGTTCAAGTCGTAACAATATTCCTCGTCAAATTTCAAACTG
TAGGAGTCCAAAATCAAAATGTGTATCTGGCAAGATACAATGACATGTTGTTGTGTTTCTGACT
CTGGATTCAGCTAATCCTGGTAACAGCAACTTTGGACTATTACAATATATATAGATAGTGTGTG
CAAGTAATTTATGAGTGCCCATTTCCATGTTTGTGAAAACATTGTGAGGGGGCTTCTAAAATTA
TCCAGACTTGGTCTAGAAGTGTTGATGTGAAACTTATCCTGAACTTTGTGGTTCTGTTTGAACA
TTGGAAAGAATCTTGACAAGCAGGAAATCAATCTGATTAACTGTGTAAGGTGATTGTGATTGTT
GTGCCCATCACAGTATACCTCTGGGTTTGGTTCCAATAATATCTAGAATAAAGACAATAGAGTT
CTCTTATCATGTGCATGTCCAAGGCCAACTATCACAACATGAAATGTTTCCCAGGCCCCATTTC
TTGGGCTGGACCCACTCCAGTCCTTGAATATATATTAACATCAATGTTGCCGTTCTCATACATC
ACTGTCCACAATTTCCCCATACTGTAGATGATCAGGGCATACATAGTTGCTGACAGACTTAAAG
ATGACATCTTGAGATCGAACTAAGCTAACTGTACGCATTCAATGGAAAGTAAAATATAGGTCAT
AGGAAAGGAGAGGTGGAGAAGAAAAGAGAAGCATACGATAAGCTGGCAACAGTGAATAATCTTG
CAAGGCGAAGCATTTCCTTATTTTGAGAGGAGCAAAAGATCCTTCAATGGGCGATCTGAAGATA
GGACTGAAAACTGACGACAACACATATGTCTGAAATTTCATTATAAGAACTTGAATTATTGGAG
GGGAACTTTGCTTGTGCTTTCTCCACATGCAAGGATGCATGAATCTATCAGATGCCTGTCCACA
CCAGTCTTCAAAGCTACGTCATATCAGGAATAAAATAGGAGAGGAAAGCAATCTTGTTCCTCCA
TTAAGTGTTACAATAATGCTAGATACCACATCTAGCTTATCCTCTTACACATGTTACTGTAGAA
CGATGTGCTTGGGTAATGAAAACCGTACAATTCAAGATGTCAGGGCAAATGAACCAGTAACCTG
TCAAACTTGTGGAGTACAACGAGGTGAGTACTTTGTTCCTTTTAGGCAAAAACGGTATACTTTA
AGACTCTGGATTGGTGCCAGCATTTTAGTTGTATCTTTCATCTTTGATTTCCTGCATTGTACTA
CCTGGTTACTTGTTGACATCTGAGCTTATTTTAGTACTATGCTGCTTAATTGTATTATAACGAT
AACACGGCCACTGATTGTTTAATGCTTGTTTCCTTAAGGGCTAACAAACTAAGCTGACGGATGA
AGTCAACAGACTGATGCAAACATGTAATCAAGCATATGTAAAATATGCTCATGATTGAGCTTTT
TGCATGTTTCTGCAGTAGCATGTGTCCTTGTAACCGAACAACATACTTTTTTAGAAAAAAAATG
AAACAGCGTACTGATTTATCCTTTGTCTGTTGTATGGCTAACTAGTAGGCTGCAATTCTCAGGT
AAATTCTCTATTTTCTAGACGTCTCATATAGTCATATGTCTGATAAATATGCATTTGTTCTGTG
TGGTTGCTAAATCCTTCCCTGATGTCCGGTTATATTGAACTGACATTTCACTGTTAGCATAATT
TTCAGGGTTGTGATGATATATCTCCATGTTCATATAATTTGTAGAAGAAAGTGCTTCTAAGTCT
GTTCCTTCTAGCACTGCAAATAATCTGACCAAACTTGTAAGCATAAACAACTGTGTCATAATAA
TTCATCATTATTTGCACCAGAAAGCGCTGTACAGTAACAGCGGTGCAAGTTAAACCGCGTGGAG
ACCAAGGGATCCCAGGCTCCCAGTATACAGTCATAAGATAACCATGGAAAATAAGATATATTGG
TCCAAGATTTCAGATAGGGCAAAAACTACTCATAGGAAACTGCACTGGAAGTCAAGAATTACAG
CTTGTAACCTGGTAGCATCTTCTACCATCTACATTTTACACAAAATTTTGGGGCATCTTGGCTG
ATACATCTGCCTCGTGGATCTTGATACTCAAGTAAGTTCTCCCAGTATGAATTGCTAACTTTCA
TATCTGGAAGTTGTTAGTTGGTCGTACATGAAATTCCTCAGCCATTGATCTTTTTAGGACAGGA
ACATTCTGCAGATTTCAGTGGTAGATCTCAAATTTAGCATGAAAGTCAAGTTACACCTACTGGC
CTTTCTTTATGTTTCAGCCCCATCTCTCTCTCTAGCGTTGGTCCCCTTGCCGGTACCATCTGAA
AATTGACTGCTTTTTGTTTGGGCTGAAGAGGGTATCCTAAAATTCTCGTTGTCACCCTGGAATA
TTAAAATAAACTGGAGTAAGTAATGCACTTAAGTACTAGCAAATGTCTTCTATTCGCTTGACAT
CATTTGTTAATTTTTAATTAGTACCTGCATGATGATCTGCATTTGTGAATCACCTGGATTTGCT
CCCTGTATAGCTTCCTTGTTCAGACATTGCTGCTGTTGATTCGCTATGCCTTGTTGCTGGTCTT
GCACCATGTTAGCCATGGCGCCTGATACTTGAGGGACCCCGCTTGGCCTAACAGGAAGACCAGC
CAAAGATGCAAATGGTGGTACACTAGACGCTGACGAAGGAATTGTTTGCCCAGGAACCCCAAAC
ATTGGCATGGTGCTTGTGCCAGGGATCCCAAGACCTTGTGGTGACGCACCTGGGATCATTGGGC
AGGGAAAGTGAGCACCAGGCATGGGTGGCATCTGAAGTGCTCCAGTGTTGCTCATGTCGAAGAC
GCCCATCCCGTACCCCAATCCCATGCCGAGATGAGGGAAATGAGCCATCGGTGGAATTTGCAAG
TGCTGCATGGCTGTTGGTAATAGCATTGGAGGAATGCACAGCCCAGTTCCCATGGACATCATCT
GTGTCAATGACAACTGCACCTTGTCAATGCATCTATGTACATATTCACCCGACAATCATGGTAC
ATTTGTTCGAAGGCAGTTTCAATGTACCTGTACTTGAAGCTGAAGGGTTTTGAGGTACTCTATA
GCTTCATCCAGCATCGAGGCTTTATCAATCTGCAAAACATAGCATGCCTGAATTGACCAAATGT
TCATTCAGAGGCATCTCAGAGGGAGCAAGACGATGGAATGGCTTATCTTTACCTTGTTGCAGTT
GGGAATGAGTTCTTGCAGAGCGCGCATCTTTTCATTGATCCTGTCCCTTCTCCTCTGCAAAGAT
TGTTGGGTTGCAATACAGTCAATAAAATTGCAGCATGAGTCGAGTCATGGGATTGAAGCAAATG
GATGCAGGATGATCAATGCACTGACATGTGAACTTTGAAGCAAATGGATGCAGGATGATCCATG
CACTGAAGATGTGAGCTACTCACCCTTTCTGATAAATTGTGAACCTCAGCTGTGCGGCTGCGTT
TCGTGCTCCTGGTTCCAGATTTTCTCAATACTCCAGGTTCATCGTCAAGATCCTGAATAGAACC
AGTTTTTTATCATGAGAATCAGCGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.309095962
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015