Detail information of Zm00001d008363_circ_g.6


General Information
CircRNA Name Zm00001d008363_circ_g.6
ID in PlantcircBase zma_circ_002674
Alias circ1251
Organism Zea mays
Position chr8: 6383881-6388405  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d008363
Parent gene annotation 5-nucleotidase
Parent gene strand -
Alternative splicing Zm00001d008363_circ_g.1 Zm00001d008363_circ_g.2 Zm00001d008363_circ_g.3 Zm00001d008363_circ_g.4 Zm00001d008363_circ_g.5 Zm00001d008363_circ_g.7 Zm00001d008363_circ_g.8 Zm00001d008363_circ_g.9
Support reads 5
Tissues seedling leaves
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered Zm00001d008363_T004:5
Zm00001d008363_T007:5
Zm00001d008363_T003:5
Zm00001d008363_T005:5
Zm00001d008363_T006:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAAAAAAGAAACAGCAGTGCTCATTACATTGTACAGTCCTTTGTAATCCAGTGGCCCAAGTTC
AGCTGGCACCAATCCCTGATCTAACTTGTCAACCATcctgaatttactttaaaacagggacgca
tcagtccatcatctgttacaacctcatacaatggatgtgaaagctggaaaaattctggcttcct
tgcagaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAATTTACTTTAAAACAGGGACGCATCAGTCCATCATCTGTTACAACCTCATACAATGGAT
GTGAAAGCTGGAAAAATTCTGGCTTCCTTGCAGAGACTATAACCTATAGTAAAAAGAATTAATG
GATATTAATGAAGTTTCCAGTGTGTTGTAAGCAATGACTGCCAAACAGACACTTCTACAAAACT
GGTATAAGGGAGAGATAAAAACTTACCATTTCAAACAGATCTCTCCATCCCACATCATTAGGAA
GAAAGCGATTGAATGCATGATTCATCATTTTGTTTGTATAATGGAAATCTGAATTAGTAATGAG
AAGCAACTTTTTTCCAGCCTGATAGTTTGTTGGAGGAAAAGCCAGCATATCAGCACAATGGTTC
TATTACACTGAATTGATCATACAGCACCATAAATGTAGAAGATTAAGAGAACACCTCACACTCG
TTATAGAAAGGGTGACTTTCATGTGTATAGTCAAAATACACCTTGAAGTACAAGTACATACATA
TCTCTAGACTATACATATCTCTAATACCCGTCCCGCATTCACAGCTGGAGAGAATTGGACGCAT
AGACTGGACTGAAAGTCACTAAACAACTGTACAGACAGTCCCTAAGTCATGATGTCCATGAACT
GATGTGCAGAAGGGACATGTAGCACTCGAAGGTGCCACAAAGCAACCTTTTTACGGATGAAGTG
GATTTCAATCTCAATGTGCTTCGCCTTCGTGCGATGATGATAAACCAGTTTGGCGGTCATATAG
ATTGCACTGGCGTTGTCACAATAGACAATTGTCGCCGAAGGAATCGAGACGTGAAACTCCTAAA
GCAATCGTCGCAGCCAGCAATATCTGGCAACTGCAGCCGCAGCAGCCCAATACTCAGCTCTGCA
CTGGAACGGGACACTGTAGTCCGCTTTGAAGACCACGAGACCAAGTTGTCGCCGAGGAAGATGC
AAAAGCCCGAGGTAGAACGCGGTAACAAGGCATTGTAGTCCGCTCTAAAGGCCAGGAGACCAAG
TTGTCCTTGAGGAAGATGCAGAAGCTCATGGTAGAACATTGGAAATCCAAGCAGCCTGCCCAAT
CGGCATCGGAGTAGGCAGGGATGGATGACACCGCACCTATGCCTAGGTGGAGACTGGCGTCGAG
GGTGCCCTTCACATAGCGCAAGATGCGCTTGATCAGGGTAAGATGGGACTCACGTGGGTTGTGC
ATGAAGAGGCAGACTTGTCCAATGGTGTAGGCAAGTTCAGTCAAAGTCAGTGTGAGGTACTGCA
CTGCATAGCGCCAGCTAGACTAAGGTACTCCAAGGGGTCAGCAACAAAGTCGCCGTCAATCACA
GACAGCTTAAACCGAGAGTTAACTGGACTACTGGAGTCGTCGTGGGGTGACAGTCAACCATGCT
GGCCCGCTGGAGCAGATCAACCACATATTGTCACTATTACAGGAGCAAGCCATAGGAGCGTGTG
ATGGAGATGCCAAGAAAGTGCCAAGGTCAGTCATGGCGAACTCAGAGCTAAGACAAAGAGTGAT
GCGCTGCAGTGGAACAAGAGAGGACGCTGACAGTACAAGTACAATGTCGTCGACGTAAAGCAGC
AGGTAGGAGACATCATCTTGCTCTTTATACATAAAGAAAGACGTGTCAAACTTCACCGCGGTGT
TGGACATCATCTCAGCATTTGTGTACTGCCGTGTGTGCCCCACGCCATGCCTTTCCTTTCTGCC
CCCCTCCCTTCTTCAAAGGGACGCACATATGACGATGCATGACTAGCGGGGGAGGAGGGAAGAC
TAGAGGAAGCAGGCTGACAATGGATCCGGTGGCACGGCTTTGGATCTAGTGGCACATCGCCTAT
TCTCCGCTTACACCCCTAGGCAAGGAGTTACCCTCCGCCCAGCACTGAAGCGCGCCTAGGTGAG
CGCCCAACACCACCTTTTGGAACAATGAGCGGTGATAACATAAAGAGGATGAGACAGCAATGGT
GCAATTAGCAATGGTGGATAGGGAGGCTAGTGAGATGGTGCACAGGTCTCCACTGTTATTATGA
AGGATCACACATCACGTTGATGGGTCTTTGACAAAAAACAGAAACATCAAATTCAATGGAACAG
TTATTATCACGTGTAAAACTGACAAACAGAAAGAAGATTGTGCGCAAGAGCAGGGGCAACAAGG
ACATTGCTGAGGTAAAAAAGAAGTGGCGGCTGTGGACAGAATGGAAGTGCCACGACTGATAACA
GGAATGAAGTGACCATTGCCCACAGTGAGAGATGACGCAGAGGGAGGGAGGGGAGTGAGTAATA
TACCATCTGAGGACAATACTATGGGACATAGCACCAATGTCAAGCACTAAGGGGTTGGCACTTT
AAAGAGGTATGTGGTTGAGGGCGGCGATGAGACCTATCAAATCTCGACCGCCAACATGAGGGGC
TCCGAGCGTCCAGGTAGGGGGCAGATTGCTGCCAAACTACCATAGAAGGAGAGAATTGTGTATA
AGCCTATGGAGATGGCCCAAGGATACCTTGCCCGTGCCAAGCTAGCTACTGTGGAGGTAGAGGA
CCAACACAGGAGGTAGAGGAATTGGTCGATGTCACGGGAGACCGGCGCGGGCAAAGGAAGCATG
CACGGAGCATGGTGTGCATAGGAATAAAGGTCGCGTGACAACAGAGCTCACGCGCGCGAGGCGG
CATGCAGGAAAGAGGATGCACGTGTGTTGAACATGCAAGGAGAGAGGAGGCACGCACAGAGATG
CGTTGCACGGGAGAGGGTGACGTGCGAAGGGGCGAAGAGGAGGCACGCACGAAGATGTCAATTG
TGGGGAAGTCGCATGGCCATGGGATCACCGACCGGAAGAGAAGCTAGAGCAAACAGAGAGAGAG
AGAGAACCCAAGCCTCGATACTATGTACAAGATAAAGATAACACCTCACACCCTTTAAGGGAGG
GGGTGCAAGGTTTTAAAGTCGTCCAACTAATCGTGAATAGTCACAATTAGTCAGCCTTATCGCT
AGAGGGAGCTCGATTAGGGTCTCCAACTCGACTAGAGCGACTAGGAAGCGATTAGTCGTCCTAG
TCGCCAACTAATCGCAATTAGTCTTCGACTAGGTGTAATGGTCGACCGGTTATGCCTGTTTTGG
GCCACTAATCCGGTCTCTATTACATGGGCTGGCCCACCACCTGTACAGCACAAACATTGTTTTT
CCCTACTTGTACCAATACAGTGCACGCATTACGCAGTGCACAGTCGCGCTCACACGTGCGCCCT
TCTCCTGCACCGCCACCCCTTCTCCAGCGCCGCCACTCTCCTCTCCTGCCGCCCTGCTCTGCTC
CGACAGCCCTCTGCTCGAGCGTCAGTTGTGCCCCCTCTACGTGCGGTCGTTGCAGTCTGCAGAG
GCCCCCCTCCAACGTGTGCTCATCCTCCTCTATTAAACCCCGACCAGGCGACCACTCCTCTGTT
CAGAATTCAGAGACCAAGATGAGCACCTCTTCAGACACTGTTCACTTATTGAGCAGTATTGTGC
CCGCCTTGGTCTCCTCTTGAGTTGTGCTTCGCTTAATTGTTGTGCCGCTGCAGATGAGAATAGG
AGGCGGTGTAATAATGTTCAAGTCATCTTCGTAGAATCTGTGTTGCCCCAGCCCCAGAACGATG
GCAGTGGCACTGGTACGATTCATGCCACGCGTGAATCAGTTGCATCAGCTTCATCTGATGTTGC
AGCTGGTTCTTCCATCAAAGATAAAGCAATTGCAGTCCTGCTACAACTATATATATATTGTCCT
GTTATAGGTGGACGACTAGGAGTCAACTAGGCTCGACTAATCGAGCAAATCGACGACTAATCGT
GATTAGTCACCTTATCAGTGCTCAGGCGACTAGAGACGACTAGCCGACTTTAAAACCTTGGAGG
GGTGACTTTCATATATATAATCAAGATACAACTTAGAGTATAAGTAAAGTACATACATATCTCT
AGACTATACATATCTCTAATAATAAGGTGGAACTGTGCTAACCTCTTTTTGATCAAGAAGAGCT
AAAGGAAGTTCTGGATCAGGCTCTACAAACCGATCAGGCTCAGCCATTATTTCTCTCTACATTT
CAACCAGCTAAAGAAGTTTTCAGAAAAAGGTAATAGTCATATATCATAATTATAATATGATTAA
CCTAAGAGTACCTTAAGTTGGCCTTCTACATGTGCTCGAAAAAGTGCTTTGGAAACAGCCTGAA
AAAAAGGTATACCAAACTTCGTTTATTACATAGCAGAAGTGGACAAGGACAAAAGTTCCACAAG
TCAAAAGAGACACGGCTTGGTGGGCGGACCTTTTTTCTGTTTCTGAATAGATTAATTCTGCATT
TATTTGTTTACTTTATTTTTAATATAATATAGTAAAAGCATGTCACAACGCTGATGTAAGCCCT
TCAAAGAGACGAAAAAAGAAACAGCAGTGCTCATTACATTGTACAGTCCTTTGTAATCCAGTGG
CCCAAGTTCAGCTGGCACCAATCCCTGATCTAACTTGTCAACCAT
Conservation Information
Conserved circRNAs osi_circ_011449
PMCS 0.041438431
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b