Detail information of Os03g0255100_circ_g.1


General Information
CircRNA Name Os03g0255100_circ_g.1
ID in PlantcircBase osa_circ_018925
Alias NA
Organism Oryza sativa
Position chr3: 8196992-8197260  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0255100
Parent gene annotation Similar to Relative to SR12 protein (Fragment). (Os03t0255100-01
);Similar to Beta-galactosidase. (Os03t0255100-02)
Parent gene strand -
Alternative splicing Os03g0255100_circ_igg.1 Os03g0255100_circ_igg.2 Os03g0255100_circ_g.2 Os03g0255100_circ_g.3
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   AG-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATAAATTGGAGCTGGCTCTGCATTAGGAAACAGATTGTAGATATGAAAAAAAACTGAAGATCA
TATTCTCGTGCCACTGAGCTTTAGCAGAACTCTTACgtcagcataatggatttcatggtgacca
tagatacaattttgagagtgtgccttcatattttgtagtatattaaatacatcaatgcttagta
agtgctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAGCATAATGGATTTCATGGTGACCATAGATACAATTTTGAGAGTGTGCCTTCATATTTTGT
AGTATATTAAATACATCAATGCTTAGTAAGTGCTGAAATATAAGTGAATTTTCATGCACAGCTA
AATGATATTATCACTAAAAAGTTTTCATATTGGAACATGAGAATAAATTGGAGCTGGCTCTGCA
TTAGGAAACAGATTGTAGATATGAAAAAAAACTGAAGATCATATTCTCGTGCCACTGAGCTTTA
GCAGAACTCTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.246437423
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017