Detail information of Os03g0255100_circ_igg.1


General Information
CircRNA Name Os03g0255100_circ_igg.1
ID in PlantcircBase osa_circ_018923
Alias Os03circ09012
Organism Oryza sativa
Position chr3: 8195711-8199128  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0255100_circ_igg.2 Os03g0255100_circ_g.1 Os03g0255100_circ_g.2 Os03g0255100_circ_g.3
Support reads 2
Tissues panicle
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTGCGCATATTGAATTGTCAGCAGTCTGATATACGGTTGCCTGAAGCCAGAAGAGTACAAA
CACCCATCATCATGTGTACCGGAACAGATCATCAAGctactattattagcaacttctgtgtcca
aaccaaccagttcttagaacattgcaatctggaaagtgatgaaagatggatcattctggtcctg
cagggaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTACTATTATTAGCAACTTCTGTGTCCAAACCAACCAGTTCTTAGAACATTGCAATCTGGAAAG
TGATGAAAGATGGATCATTCTGGTCCTGCAGGGAACCAAAGAAAGTCACCTTTACAGGCTGAAG
CAAGTGTTTCACAATAAACAATAATGCTGCAAACATCACGGGGTACGAAAGTTTTCGACTTTCA
GCAAAGTGCATTCTTCAGCTGTTCACACAAGGGGTCAAGGGGTATATCTATTCAATGAGTAAAA
ACTTTTGCATTTTGTTATTTATGCAGCAACAGAACAGCAATCTTATGGACTTCCTTAAGGTGGC
GCTGCGTGCAAGATACCTCTGTTCAGACTTCAAGAGTTTCAGATGCTTTTCTTCACACAAGTGC
ATCAGAGTTTCAGGTGCATTTCTAGATAGCAAACTTACAATTCAACAGATGAAGGTGTGCTTTA
TATTTGATTGAAATACAAAGTATATCTCAAAAGAATTACAAAAGATTCATTGCCTTGTACAATT
GTAGAGATTCACCATGTTAACAAGTACAACTCAATCTAAACGTACGATCTAACAGCTTGCAAGG
CTCCAAAGCAATTTGGTATTATTTATTCCTTTTCCACCTGCATTTGGGAACATTTATTCCTTGT
TGGTTGTTGCCTGCTTTCTACACAGAAGGTTTTCTTGCTTCACCCCCTCAAACTACTTTTGTTT
CCTACTAACGAGCACTATCAAACCTGTCAGGAGCATGCAGCTTCCACCACTAGACTTTTTGTGA
CCCCACTGCATGGATCTCCAAAGTTATTCGATGACACTGGAACACTGCAATTGGTCATTCCAAC
ACAGGCCTGCAGAGTTCAACGAGTAAGAAAAACACCACTGGCATTGAAGCATGACAAGTATGGA
AGAGGATAAGCTCAGATTACCTCTTGAACAACTGCAAGAGCCTGAGAGCTGCTGCATTCACCAT
GGTTGTAGTTCCCACAGGTGCCACTCGGTGTCCCAAAGCTTGCAAACTTGATGTTGCTGATGAC
CTGACCTTCTCTAGGGCACTCCAGGCGAAGTGCTGGTCCCTGCGTCTGAGACGTCTGTTGGGGA
GAGATCCAGCTATCGATTTGGGCTGGATGCATCTCTGAAACATGTGCACATATACTACTTGTCT
GCCTTGTTGTGAAGGATATCATGCTTGGATCACCACCAAACTGCTCAAAGAGGACTAGATCATT
GCTACCAGGTTGGAGAAATGACCTGGGCACGTGGTACCTGTTTAACAAGGTAAGGCATTCAATC
AGTCAGCATAATGGATTTCATGGTGACCATAGATACAATTTTGAGAGTGTGCCTTCATATTTTG
TAGTATATTAAATACATCAATGCTTAGTAAGTGCTGAAATATAAGTGAATTTTCATGCACAGCT
AAATGATATTATCACTAAAAAGTTTTCATATTGGAACATGAGAATAAATTGGAGCTGGCTCTGC
ATTAGGAAACAGATTGTAGATATGAAAAAAAACTGAAGATCATATTCTCGTGCCACTGAGCTTT
AGCAGAACTCTTACAGAGTTTGTGATGGCTGCCCACATTTCTTTAGGCACTTGTTCGAACTATA
AGCTCCTCTGTAGTTGCATGAGTTTACACAGCCACTTTGTGGAGCCAAATTTGTTGGCCAGTAG
CGACCAATGCTCTGGCCATTCACCCATGCCTCCCCTTTCCCCATTCCTGTGAAGTCTATGGCAA
CAGGGTCATCACCTGCAGGAGCCGTAAACTTGGTCTGCAATTGGAGCATTTCATTTAGCAACTT
TGCACATTATCCCAAGGTAATAATTGAACAAAAAGGATTGATCAAACAATGGAGTGTATAGATA
TAGCTTATTGAGCCCAAAGCCATTTTACATGTACACAAACGTCAAACACAGCTTAATTACTGGG
TCAGAGGATCATACTGACCTTGTACCATATCAATGGTTGGTTGGTCGGGTATGCGTTGTCTGAA
ACCCATTCTGGTGAGGCTTCTGAAGGATTATACAGATGCAAGTCTTCTCCTCTGAGTCCAATCT
GAAGCGGTGAAAATTATGATGAGGGAAAACAAACCATGTTATGTTTACGGTTGACCTACTGTAC
CGAAGGCATTCTCAAAACAGCATTAGCCAATAGTTTCCTTACAAAAAAAATCTGAAACAGTATA
TGAATAGATAGTAGAATACCTGGTATGTCCAATCTGTAGAAGATAGATTAAGGGCACCATTTGG
TCCACTCAACTTTACTGGACCAGTGACTCCAGCGCCAACCAGGTCAAAGAATGCACCATAATTC
TGATGTTACAGAATACATAGTTGTTTATTAAATAGAAAGAAGTAAAATAGGATATTAGTTTTGG
TGCATCTCTTCTAGAGTAAGTGAAGAATAAATTACCGATAGCCCAACTGTTGTGCTCAGAAGAT
CTATTTTGTTCTTCCCAGGTACAAGTGTAACTGGTGTCTGCAATGAGATGAGCGAGCTGCTAGC
ACTGCCCTTAGCACTTCCTGGCATGTGTCAACAATTACATTTCAGCACACAAATACTACTTGTG
CGTGTAAGACCAATGTTCATAATTAACATCACAATTCGAATGTCATTTGAAAGGTCTTTGCATT
GTGACCTCAAGCTTTACCTGCTAGTTTGCCATTGATGTAGATCTGAAGAACATGTCCAAGTGAG
TTGACAAGCAGATTGGACTGGCTGCCGTTTAGATATGGTTCATCACCTTTGACAACGATGCTGC
AGAAAGCACGATTAATTGAAACTGGTGAGTAACCTTGTGACTGCCAGTTTTCTTATATATATAT
ATAGGAGTATATGGACAATTACACCTGAGGCGTGTGAGTGCGAACCCTGTACCTTGTTGAGTAC
CACAGGAAATCACTGGCATCGGCTGTGGTGTTTATCTGCTCCATCAGTCCAGGTTTCGTCAAGG
CGTTCTCCTTTGTAATACCAACAGGCTCTATGGCATAACTCCAGCCAGCTGTAGCAAGTTCCGG
TGTGATTAATGAATCATCAGTATCTTGGATACTTGATCCCAGGCTTCTCATTTCTGAAGTTGTT
ACCTGAGAATTGATCTGCAAGGGGGCAACCACATCCACATGCATCAGAATCAGTTCTCACCAAT
GTTCTTTCTCAAATGCAGATCATTGTCTAGCAAAGTGAGGGCAAGGAATGCACATACCTGGGCT
GTGTTCAATACCACATTTTTGCAGTCAGGAAGGATGCTTACAGACCAGGCAGGGAGCTTATACG
TGTTTCCGTTGAATTTGACAGTTTTATCAGACTGAGCATCCACGTTGGCAAGGAATGCTGCGCA
TATTGAATTGTCAGCAGTCTGATATACGGTTGCCTGAAGCCAGAAGAGTACAAACACCCATCAT
CATGTGTACCGGAACAGATCATCAAG
Conservation Information
Conserved circRNAs osi_circ_004693* osi_circ_014147
PMCS 0.221156471
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015