Plant Circular RNA Database

Detail information of Os01g0607400_circ_g.15

			
						 General Information
					
						CircRNA Name
						Os01g0607400_circ_g.15
					
						ID in PlantcircBase
						osa_circ_002540
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 23943550-23947120  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0607400						
					
						Parent gene annotation
						
							Similar to STYLOSA protein. (Os01t0607400-01);Similar to STYLOSA
 protein. (Os01t0607400-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0607400_circ_g.11 Os01g0607400_circ_g.12 Os01g0607400_circ_g.13 Os01g0607400_circ_g.14 Os01g0607400_circ_g.16 Os01g0607400_circ_g.17 Os01g0607400_circ_g.18 Os01g0607400_circ_g.19 Os01g0607400_circ_g.20 Os01g0607400_circ_g.21 Os01g0607400_circ_ag.1 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0607400-01:8
Os01t0607400-02:1

General Information
CircRNA Name	Os01g0607400_circ_g.15
ID in PlantcircBase	osa_circ_002540
Alias	NA
Organism	Oryza sativa
Position	chr1: 23943550-23947120 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0607400
Parent gene annotation	Similar to STYLOSA protein. (Os01t0607400-01);Similar to STYLOSA protein. (Os01t0607400-02)
Parent gene strand	-
Alternative splicing	Os01g0607400_circ_g.11 Os01g0607400_circ_g.12 Os01g0607400_circ_g.13 Os01g0607400_circ_g.14 Os01g0607400_circ_g.16 Os01g0607400_circ_g.17 Os01g0607400_circ_g.18 Os01g0607400_circ_g.19 Os01g0607400_circ_g.20 Os01g0607400_circ_g.21 Os01g0607400_circ_ag.1
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0607400-01:8 Os01t0607400-02:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACCAACTGGATCCGAAGAGACCTTCCCTTCTGCTTGGAAGGCCTTTGCAGTTGCCTGCAGATTT
CTCTTCATAAAGTAGTCATATATGTAGACATCCAGCctttatcaggatatctacatctccacca
cttagactaggagaaccaatatttggaataatatcaccaccactgtttgtctgcccaacattcc
tgttgtta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1156
Transcript exons: 23943550-23943834,23944526-23944575,23944735-23944810,23
944937-23945024,23945578-23945660,23945772-23946137,2394
6798-23946907,23947023-23947120
CTTTATCAGGATATCTACATCTCCACCACTTAGACTAGGAGAACCAATATTTGGAATAATATCA
CCACCACTGTTTGTCTGCCCAACATTCCTGTTGTTAAGCATCATCCTTAATCGTCTGCTGTCAA
CATCACTAGATGTTGGGGAAGCCATATTTTGCTGAGCCTGCAACATAAGCTGCTGCTGCTGTTG
CGGGGTAAGAAAATGAATCTGCTGTTGTAATTGCTGTTGATTCTGCACAAATGACTTCTGCTGC
AGAAGTCCAGAGCGAAGTTGTTCAAGTCCCGTGAGTGGCCATCCTTTCAGAGTCAAATTGTTTC
CAGCTTGATTAGACCCTTGGACACCAATAAATGACCCCTCAGGACCTGCTGACCTTGGTGTCAA
AATGGGATTCATCTCTGTCTTGATACTCTGAGCTGGCCCAGGAATCTGTGGACTCCTGGACTGA
ACTTGTTGCAGACTGCCTGACAGACCACCAACAGTACCATGCAAAATTTGCCCTGAAGATTGTC
CACTTGCAGATGCTTTCAACAACGCTTCGTTTGAATCAAGTAGTTGTCCAGCATTCTCTCCATA
TCTTTGCTTAATTGACACCTCGTCCAAACCATCTCTCTGGGAAGGCAACTTTAACCTCTCCTCA
TACATTTTTGTTGCCATAACATTTGCAGTACTCTGGTTTTGCCGCATTAAAGGATTGTTTCCAG
GAAGTCCACTTGCAGTACCATTAAGAAGATGAGTACCATCTCTGCGCTGTTGTTGTTGCTGCTG
CTGCTGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCTGCTGCTGT
GCTGCTCTTTGTAGCAACATTTGTTGCATTTGTATATGCTGTGGTTGCTGTTGTCGCTGTTGAG
GAGGTTGCTGCTGCTGCTGCTGTTGTTGCTCCCTGGCTTTCATGTGCTGAGTTTCAATATATGA
AGCCGCAACATCTGAATGCTTCTCATTTGTCCTTGCTATGAAAATATCCCAAAAAACTGACCAC
CACTCAAAAAGAAAACCACCAGGAGCATCAATCGCAACTGGATCCGAAGAGACCTTCCCTTCTG
CTTGGAAGGCCTTTGCAGTTGCCTGCAGATTTCTCTTCATAAAGTAGTCATATATGTAGACATC
CAGC
						
					

						Genomic sequence
						
							CTTTATCAGGATATCTACATCTCCACCACTTAGACTAGGAGAACCAATATTTGGAATAATATCA
CCACCACTGTTTGTCTGCCCAACATTCCTGTTGTTAAGCATCATCCTTAATCGTCTGCTGTCAA
CATCACTAGATGTTGGGGAAGCCATATTTTGCTGAGCCTGCAACATAAGCTGCTGCTGCTGTTG
CGGGGTAAGAAAATGAATCTGCTGTTGTAATTGCTGTTGATTCTGCACAAATGACTTCTGCTGC
AGAAGTCCAGAGCGAAGTTGTTCAAGTCCCTGTGAAAACAAAAAGAAAAAAAATGGCACATGAA
AATAAGCACCGAGAGATAGCATATGCAGTCAATTAATAATAGATACCAATCACAGTCGTTTACC
ACTATATTGGAAAATAAAATTGCAAGTTGGTCCCATAATTGCTACCAATGATATTAATGCTGGC
ATATATTACCAATACACAAACTGCCACAAATTAATTACGTATATGCAGAGGAATAGACCCAAAA
AGAAGGATGGATTTAAAGTTTTAAATATAAGATGAATCAGTAAGGCAAGTGTGAAATTTGTTGA
AAGATGGTCAATAAAATAAAAGTTTCTTGGAATTAGGCGCTTGCCAATGGCATTTCTTGGATTT
TCTCATAAAATAAACTGAGAACTACAATTGCACTATGCAAATGGACAGTGCAAACAAAACAAAA
ACAACACAGGAAAACTTATAAGCTTATCTTGCTCAGTAGAAGTGCTACAAGACAGTCTATGCCA
TTAATAAACTAGAGAAAGCATGAACACCCAAGGGAGAAAAGACCGCTGCATTTCCTCTCTATAG
GGGAGTTAAACCTAGGCGCAGTCTATTGCAGGAGCATTAATCATAAGGAAAATGCATAAAATCT
GTATTTAAGCCAGGCAATCTATATAGAAACCATTCATGTCCAAGACTAAAGTTACTACTTGATC
ATAAACTAAACCTTACCGTGAGTGGCCATCCTTTCAGAGTCAAATTGTTTCCAGCTTGATTAGA
CCCTGTTAAAAATACATCTGATTAAGGTATGCATAACATAAAAAAGATCATGTTCCAAGGTCCT
ATAATTTTACAGCAAGGCTAATAAACTCTTCAAGATTGAACTAAGAAAAAAAATTACAAGAAAA
GTAATTCCAGGGACTATACTGAAAACATGTTACCTTGGACACCAATAAATGACCCCTCAGGACC
TGCTGACCTTGGTGTCAAAATGGGATTCATCTCTGTCTTGATACTCTGCTAATAATATGAATAA
TATTAGGAATACATGTTGACATTTATTCTTTTTGTCCTCCTCGCCTTGGAGGTAAGCATGTTAG
GAATTAGAGATACATGACAGATCAGAATAAACAGAAGACTAACCTGAGCTGGCCCAGGAATCTG
TGGACTCCTGGACTGAACTTGTTGCAGACTGCCTGACAGACCACCAACAGTACCATGCAAAATT
TGCCTACAAAGGAAAGAAGTAAACTATCTGAGAAAAGTTACCTCTTGCAGCGCATGTATATTAT
GGTCAATATAAAACATGGTGATGTTCAATAGGCATCTACATTCCATTAAATAAGCAATAAAATA
TGGGAATGAGATGACACTTCAGTATATTTTGTTTTGGACACATCATTTTTCAAAACATAACTAA
ATGATTTATATCTACACAAGTAATTAAGAACCAAAATTAAGAGCCAAAACAATGCATGCATGTA
AAAAAAACAGCAAAATGCAGAAGCAGCAATTCCAAGCATAAATAAGAATAACAAATAGAAGTGT
GTCTAATTTATCTCCATAACTAACCAAATGACTAAAAAGAAAAGTTCAAAATAAAATAATATTT
TTCGACCAACAGATAGACAACTCTGTGAATTTCGATACCAGAAGTACTAAGTGTAGTGTGGATT
AGATTACAGTGAAGCTGTAACACGAATGGTGAAATATCAGCTACAACTGTACACGGTATAAAGC
TTGTTAAAGTAATTATATACTTAATTCACAAATTCAGCAGGTACCCTGAAGATTGTCCACTTGC
AGATGCTTTCAACAACGCTTCGTTTGAATCAAGTAGTTGTCCAGCATTCTCTCCATATCTTTGC
TGAAACCAAAGTTCACGTGTTATGATAATATTAACCACAAAATGAACATATTGGTGAGGTGAGG
AATCTATAGAAACAACATCAATCAATGATTATAGATAACAGTCAACCTTAATTGACACCTCGTC
CAAACCATCTCTCTGGGAAGGCAACTTTAACCTCTCCTCATACATTTTTGTTGCCATAACATTT
GCAGTACTCTGGTTTTGCCGCATTAAAGGATTGTTTCCAGGAAGTCCACTTGCAGTACCATTAA
GAAGATGAGTACCATCTCTGCGCTGTTGTTGTTGCTGCTGCTGCTGCTGTTGCTGCTGTTGCTG
CTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCTGCTGCTGTGCTGCTCTTTGTAGCAACATTTGT
TGCATTTGTATATGCTGTGGTTGCTGTTGTCGCTGTTGAGGAGGTTGCTGCTGCTGCTGCTGTT
GTTGCTCCCTGGCTTTCATGTGCTGAGTCTGAAAGAGTGGTGAGTTGAAGCTGAGTTAGAACTG
TCAATTCAGGGAAAAAGATCTCTTCAAGTTCATACTACCATAACTAAAGATGCAAATCAGACAA
TTTGGAATATTTATCGCACTTGATTACAGCATTAGTAAAATATGCTCCCAGGAAAAAAATTGAA
TAGCCTACAATGTAAAACCGAAACAAAATATAAGTTACAATGGAATTACCTGCTTGTGGTGGAT
CTGACATACATATAACACAAGCAGTTGAATCATAAAGCAACAAACAAACAGAAAGAATCACTAA
CCAATCAAAAGGCAGTTATTGACAAGGTAAAATCAGAAAGGCTCAGTATCTCACGCAAAATGAG
TCGAGTCATTAGCGCAACTAATCGAGTATTAATTATTATTATAAACTTGAAAAATGTTTTTTTT
TATTTTTTTTTTGAAAACTTCTATATAGAATTTTTTTTTTGCATAAAATGCACTGTTTGGCAGT
TCGGGAAGCGTGCTAATGGGAAACGAGGGAGTTGCCATTTCAATATGCAGAAACAAACTGAGCG
TAATGCTTTACAATTCAAGCTGAACTTATTTGAAAACGCCAGCATGGCAAACTAAAATGCCTGA
AACATTAAATATGTCCATAAAAAGATAATTAGATGCACAGACACTTACTTCAATATATGAAGCC
GCAACATCTGAATGCTTCTCATTTGTCCTTGCTATGAAAATATCCCAAAAAACTGACCACCACT
CAAAAAGAAAACCACCAGGAGCATCAATCGCTGCAAGAAACAAGAGTTCAGAAAGTTCGCGACA
TCCTTTACTAACAAAAGGTAAAAAATTGTAGCAAAACTCATGACACAAATAGCTTCACTCAACT
TGCTGGGAAATACATACCAACTGGATCCGAAGAGACCTTCCCTTCTGCTTGGAAGGCCTTTGCA
GTTGCCTGCAGATTTCTCTTCATAAAGTAGTCATATATGTAGACATCCAGC
						
					

			
		

Sequences
Splice junction sequence	ACCAACTGGATCCGAAGAGACCTTCCCTTCTGCTTGGAAGGCCTTTGCAGTTGCCTGCAGATTT CTCTTCATAAAGTAGTCATATATGTAGACATCCAGCctttatcaggatatctacatctccacca cttagactaggagaaccaatatttggaataatatcaccaccactgtttgtctgcccaacattcc tgttgtta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1156 Transcript exons: 23943550-23943834,23944526-23944575,23944735-23944810,23 944937-23945024,23945578-23945660,23945772-23946137,2394 6798-23946907,23947023-23947120 CTTTATCAGGATATCTACATCTCCACCACTTAGACTAGGAGAACCAATATTTGGAATAATATCA CCACCACTGTTTGTCTGCCCAACATTCCTGTTGTTAAGCATCATCCTTAATCGTCTGCTGTCAA CATCACTAGATGTTGGGGAAGCCATATTTTGCTGAGCCTGCAACATAAGCTGCTGCTGCTGTTG CGGGGTAAGAAAATGAATCTGCTGTTGTAATTGCTGTTGATTCTGCACAAATGACTTCTGCTGC AGAAGTCCAGAGCGAAGTTGTTCAAGTCCCGTGAGTGGCCATCCTTTCAGAGTCAAATTGTTTC CAGCTTGATTAGACCCTTGGACACCAATAAATGACCCCTCAGGACCTGCTGACCTTGGTGTCAA AATGGGATTCATCTCTGTCTTGATACTCTGAGCTGGCCCAGGAATCTGTGGACTCCTGGACTGA ACTTGTTGCAGACTGCCTGACAGACCACCAACAGTACCATGCAAAATTTGCCCTGAAGATTGTC CACTTGCAGATGCTTTCAACAACGCTTCGTTTGAATCAAGTAGTTGTCCAGCATTCTCTCCATA TCTTTGCTTAATTGACACCTCGTCCAAACCATCTCTCTGGGAAGGCAACTTTAACCTCTCCTCA TACATTTTTGTTGCCATAACATTTGCAGTACTCTGGTTTTGCCGCATTAAAGGATTGTTTCCAG GAAGTCCACTTGCAGTACCATTAAGAAGATGAGTACCATCTCTGCGCTGTTGTTGTTGCTGCTG CTGCTGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCTGCTGCTGT GCTGCTCTTTGTAGCAACATTTGTTGCATTTGTATATGCTGTGGTTGCTGTTGTCGCTGTTGAG GAGGTTGCTGCTGCTGCTGCTGTTGTTGCTCCCTGGCTTTCATGTGCTGAGTTTCAATATATGA AGCCGCAACATCTGAATGCTTCTCATTTGTCCTTGCTATGAAAATATCCCAAAAAACTGACCAC CACTCAAAAAGAAAACCACCAGGAGCATCAATCGCAACTGGATCCGAAGAGACCTTCCCTTCTG CTTGGAAGGCCTTTGCAGTTGCCTGCAGATTTCTCTTCATAAAGTAGTCATATATGTAGACATC CAGC
Genomic sequence	CTTTATCAGGATATCTACATCTCCACCACTTAGACTAGGAGAACCAATATTTGGAATAATATCA CCACCACTGTTTGTCTGCCCAACATTCCTGTTGTTAAGCATCATCCTTAATCGTCTGCTGTCAA CATCACTAGATGTTGGGGAAGCCATATTTTGCTGAGCCTGCAACATAAGCTGCTGCTGCTGTTG CGGGGTAAGAAAATGAATCTGCTGTTGTAATTGCTGTTGATTCTGCACAAATGACTTCTGCTGC AGAAGTCCAGAGCGAAGTTGTTCAAGTCCCTGTGAAAACAAAAAGAAAAAAAATGGCACATGAA AATAAGCACCGAGAGATAGCATATGCAGTCAATTAATAATAGATACCAATCACAGTCGTTTACC ACTATATTGGAAAATAAAATTGCAAGTTGGTCCCATAATTGCTACCAATGATATTAATGCTGGC ATATATTACCAATACACAAACTGCCACAAATTAATTACGTATATGCAGAGGAATAGACCCAAAA AGAAGGATGGATTTAAAGTTTTAAATATAAGATGAATCAGTAAGGCAAGTGTGAAATTTGTTGA AAGATGGTCAATAAAATAAAAGTTTCTTGGAATTAGGCGCTTGCCAATGGCATTTCTTGGATTT TCTCATAAAATAAACTGAGAACTACAATTGCACTATGCAAATGGACAGTGCAAACAAAACAAAA ACAACACAGGAAAACTTATAAGCTTATCTTGCTCAGTAGAAGTGCTACAAGACAGTCTATGCCA TTAATAAACTAGAGAAAGCATGAACACCCAAGGGAGAAAAGACCGCTGCATTTCCTCTCTATAG GGGAGTTAAACCTAGGCGCAGTCTATTGCAGGAGCATTAATCATAAGGAAAATGCATAAAATCT GTATTTAAGCCAGGCAATCTATATAGAAACCATTCATGTCCAAGACTAAAGTTACTACTTGATC ATAAACTAAACCTTACCGTGAGTGGCCATCCTTTCAGAGTCAAATTGTTTCCAGCTTGATTAGA CCCTGTTAAAAATACATCTGATTAAGGTATGCATAACATAAAAAAGATCATGTTCCAAGGTCCT ATAATTTTACAGCAAGGCTAATAAACTCTTCAAGATTGAACTAAGAAAAAAAATTACAAGAAAA GTAATTCCAGGGACTATACTGAAAACATGTTACCTTGGACACCAATAAATGACCCCTCAGGACC TGCTGACCTTGGTGTCAAAATGGGATTCATCTCTGTCTTGATACTCTGCTAATAATATGAATAA TATTAGGAATACATGTTGACATTTATTCTTTTTGTCCTCCTCGCCTTGGAGGTAAGCATGTTAG GAATTAGAGATACATGACAGATCAGAATAAACAGAAGACTAACCTGAGCTGGCCCAGGAATCTG TGGACTCCTGGACTGAACTTGTTGCAGACTGCCTGACAGACCACCAACAGTACCATGCAAAATT TGCCTACAAAGGAAAGAAGTAAACTATCTGAGAAAAGTTACCTCTTGCAGCGCATGTATATTAT GGTCAATATAAAACATGGTGATGTTCAATAGGCATCTACATTCCATTAAATAAGCAATAAAATA TGGGAATGAGATGACACTTCAGTATATTTTGTTTTGGACACATCATTTTTCAAAACATAACTAA ATGATTTATATCTACACAAGTAATTAAGAACCAAAATTAAGAGCCAAAACAATGCATGCATGTA AAAAAAACAGCAAAATGCAGAAGCAGCAATTCCAAGCATAAATAAGAATAACAAATAGAAGTGT GTCTAATTTATCTCCATAACTAACCAAATGACTAAAAAGAAAAGTTCAAAATAAAATAATATTT TTCGACCAACAGATAGACAACTCTGTGAATTTCGATACCAGAAGTACTAAGTGTAGTGTGGATT AGATTACAGTGAAGCTGTAACACGAATGGTGAAATATCAGCTACAACTGTACACGGTATAAAGC TTGTTAAAGTAATTATATACTTAATTCACAAATTCAGCAGGTACCCTGAAGATTGTCCACTTGC AGATGCTTTCAACAACGCTTCGTTTGAATCAAGTAGTTGTCCAGCATTCTCTCCATATCTTTGC TGAAACCAAAGTTCACGTGTTATGATAATATTAACCACAAAATGAACATATTGGTGAGGTGAGG AATCTATAGAAACAACATCAATCAATGATTATAGATAACAGTCAACCTTAATTGACACCTCGTC CAAACCATCTCTCTGGGAAGGCAACTTTAACCTCTCCTCATACATTTTTGTTGCCATAACATTT GCAGTACTCTGGTTTTGCCGCATTAAAGGATTGTTTCCAGGAAGTCCACTTGCAGTACCATTAA GAAGATGAGTACCATCTCTGCGCTGTTGTTGTTGCTGCTGCTGCTGCTGTTGCTGCTGTTGCTG CTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCTGCTGCTGTGCTGCTCTTTGTAGCAACATTTGT TGCATTTGTATATGCTGTGGTTGCTGTTGTCGCTGTTGAGGAGGTTGCTGCTGCTGCTGCTGTT GTTGCTCCCTGGCTTTCATGTGCTGAGTCTGAAAGAGTGGTGAGTTGAAGCTGAGTTAGAACTG TCAATTCAGGGAAAAAGATCTCTTCAAGTTCATACTACCATAACTAAAGATGCAAATCAGACAA TTTGGAATATTTATCGCACTTGATTACAGCATTAGTAAAATATGCTCCCAGGAAAAAAATTGAA TAGCCTACAATGTAAAACCGAAACAAAATATAAGTTACAATGGAATTACCTGCTTGTGGTGGAT CTGACATACATATAACACAAGCAGTTGAATCATAAAGCAACAAACAAACAGAAAGAATCACTAA CCAATCAAAAGGCAGTTATTGACAAGGTAAAATCAGAAAGGCTCAGTATCTCACGCAAAATGAG TCGAGTCATTAGCGCAACTAATCGAGTATTAATTATTATTATAAACTTGAAAAATGTTTTTTTT TATTTTTTTTTTGAAAACTTCTATATAGAATTTTTTTTTTGCATAAAATGCACTGTTTGGCAGT TCGGGAAGCGTGCTAATGGGAAACGAGGGAGTTGCCATTTCAATATGCAGAAACAAACTGAGCG TAATGCTTTACAATTCAAGCTGAACTTATTTGAAAACGCCAGCATGGCAAACTAAAATGCCTGA AACATTAAATATGTCCATAAAAAGATAATTAGATGCACAGACACTTACTTCAATATATGAAGCC GCAACATCTGAATGCTTCTCATTTGTCCTTGCTATGAAAATATCCCAAAAAACTGACCACCACT CAAAAAGAAAACCACCAGGAGCATCAATCGCTGCAAGAAACAAGAGTTCAGAAAGTTCGCGACA TCCTTTACTAACAAAAGGTAAAAAATTGTAGCAAAACTCATGACACAAATAGCTTCACTCAACT TGCTGGGAAATACATACCAACTGGATCCGAAGAGACCTTCCCTTCTGCTTGGAAGGCCTTTGCA GTTGCCTGCAGATTTCTCTTCATAAAGTAGTCATATATGTAGACATCCAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_010292 						
					
						PMCS
						0.224975254

Conservation Information
Conserved circRNAs	osi_circ_010292
PMCS	0.224975254

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							23947094-23947102(-)
						
						Potential amino acid sequence
						
							MKRNLQATAKAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQHM
KAREQQQQQQQQPPQQRQQQPQHIQMQQMLLQRAAQQQQQQQQQQQQQQQQQQQQQQQQQQQRR
DGTHLLNGTASGLPGNNPLMRQNQSTANVMATKMYEERLKLPSQRDGLDEVSIKQRYGENAGQL
LDSNEALLKASASGQSSGQILHGTVGGLSGSLQQVQSRSPQIPGPAQSIKTEMNPILTPRSAGP
EGSFIGVQGSNQAGNNLTLKGWPLTGLEQLRSGLLQQKSFVQNQQQLQQQIHFLTPQQQQQLML
QAQQNMASPTSSDVDSRRLRMMLNNRNVGQTNSGGDIIPNIGSPSLSGGDVDILIKAGCLHI*(
-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	23947094-23947102(-)
Potential amino acid sequence	MKRNLQATAKAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQHM KAREQQQQQQQQPPQQRQQQPQHIQMQQMLLQRAAQQQQQQQQQQQQQQQQQQQQQQQQQQQRR DGTHLLNGTASGLPGNNPLMRQNQSTANVMATKMYEERLKLPSQRDGLDEVSIKQRYGENAGQL LDSNEALLKASASGQSSGQILHGTVGGLSGSLQQVQSRSPQIPGPAQSIKTEMNPILTPRSAGP EGSFIGVQGSNQAGNNLTLKGWPLTGLEQLRSGLLQQKSFVQNQQQLQQQIHFLTPQQQQQLML QAQQNMASPTSSDVDSRRLRMMLNNRNVGQTNSGGDIIPNIGSPSLSGGDVDILIKAGCLHI*( -)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0607400_circ_g.15

Address

Any questions?

Supported by