Detail information of Os08g0192400_circ_g.6


General Information
CircRNA Name Os08g0192400_circ_g.6
ID in PlantcircBase osa_circ_036252
Alias Os_ciR11689
Organism Oryza sativa
Position chr8: 5403257-5403846  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os08g0192400
Parent gene annotation Similar to DRP1 protein. (Os08t0192400-00)
Parent gene strand -
Alternative splicing Os08g0192400_circ_g.2 Os08g0192400_circ_g.3 Os08g0192400_circ_g.4 Os08g0192400_circ_g.5 Os08g0192400_circ_g.7
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0192400-00:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCAGCATGAAGAGGGATCTCACTCACATCTTCACCAAAATCACTGTCGAATTCATCACCAGC
ATCCTGCTCTTCCTCGTAGTTGTCATCTTCTTCATCcttcatcgttgcttctttctcagcacgt
attgcctccctctcagcttgtctgacgatgacagatgttctagttgatttcctgatggtctttt
caccggtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCATCGTTGCTTCTTTCTCAGCACGTATTGCCTCCCTCTCAGCTTGTCTGACGATGACAGAT
GTTCTAGTTGATTTCCTGATGGTCTTTTCACCGGTCTCCAGTTCATCAGGAATGTCTGTTTGCT
TAGATGGACTTTGCTGATCTGAATACTTGTCAGTTTTGGAATCATCTTCCAGCTTTGGGACCAC
CTTCTTCTTCTTCTTGGCATTGATTTTTTTCATAGTCTTCCCAGGGAATATGAGTCGCTTTTTG
ATAGGTAATCTGCTTCATGATTGAGTTGTGACATGAGTGTAGAACTAATATACACCATATTGTG
ACTTGCTCTCAACAAACACATGTACCTACCTCTCACGTACTTCCTTTTCCGGTTCATCATCAGG
TTCCGACTCCTGGATGAATCCAAAGGAGTTACATCAAACAACTATGTGCAGTGCTTAGTAAGTA
GAAGCAGAAGAGCAGCACACCGGTGAAAGCTAAAATGATTAGGAGCAGCATGAAGAGGGATCTC
ACTCACATCTTCACCAAAATCACTGTCGAATTCATCACCAGCATCCTGCTCTTCCTCGTAGTTG
TCATCTTCTTCATC
Conservation Information
Conserved circRNAs osi_circ_007584*
PMCS 0.237373136
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015