Detail information of Os03g0130800_circ_g.1


General Information
CircRNA Name Os03g0130800_circ_g.1
ID in PlantcircBase osa_circ_017772
Alias NA
Organism Oryza sativa
Position chr3: 1752467-1752736  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0130800
Parent gene annotation Bromodomain containing protein. (Os03t0130800-01);Non-protein co
ding transcript. (Os03t0130800-02)
Parent gene strand +
Alternative splicing ENSRNA049473927_circ_ag.1 Os03g0130500_circ_g.1 Os03g0130500_circ_g.2 Os03g0130500_circ_g.3 Os03g0130500_circ_g.4 Os03g0130500_circ_g.5 Os03g0130800_circ_g.2 Os03g0130800_circ_g.3 Os03g0130800_circ_g.4 Os03g0130800_circ_g.5 Os03g0130800_circ_g.6 Os03g0130800_circ_g.7 Os03g0130950_circ_igg.1 Os03g0130950_circ_igg.2 Os03g0131100_circ_g.1 Os03g0131100_circ_g.2 Os03g0131200_circ_g.1 Os03g0131200_circ_g.2 Os03g0131200_circ_g.3 Os03g0131200_circ_g.4 Os03g0131200_circ_g.5 Os03g0131200_circ_g.6 Os03g0131200_circ_g.7 Os03g0131200_circ_g.8 Os03g0131200_circ_g.9 Os03g0131200_circ_g.10 Os03g0131200_circ_g.11 Os03g0131333_circ_g.1 Os03g0131333_circ_g.2 Os03g0131500_circ_g.1 Os03g0132000_circ_g.1 Os03g0132200_circ_g.1 Os03g0132200_circ_g.2 Os03g0132800_circ_g.1 Os03g0133000_circ_g.1 Os03g0133300_circ_g.1 Os03g0133300_circ_g.2 Os03g0133300_circ_g.3 Os03g0133300_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0130800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTGGGAGCAGGGGACGCTGCGTCGGATGGCGGGCCCACTACGGGGACTCCCCTCCCGGACAA
AAAGTTGCTTCTCTTCATCCTCGACAGGCTCCAGAAgatgatgaggcgcccgcggccgccgtgg
tggtgaaggtggaggtggaggagaagaagaagaaggtctcgtcgaaagcgaccgggaaaggtga
ggcttgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGATGAGGCGCCCGCGGCCGCCGTGGTGGTGAAGGTGGAGGTGGAGGAGAAGAAGAAGAAGG
TCTCGTCGAAAGCGACCGGGAAAGGTGAGGCTTGGAGGGAAGCCAAGCATTAGTGTTGAAGTGG
TTAAAGAATTTGAAATTTTCTCGGGTTAACTCCTCCTTGCGCTTGTGGGAGCAGGGGACGCTGC
GTCGGATGGCGGGCCCACTACGGGGACTCCCCTCCCGGACAAAAAGTTGCTTCTCTTCATCCTC
GACAGGCTCCAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.290313858
Functional Information
Coding potential Y
Potential coding position 1752665-1752468(+)
1752720-1752717(-)
Potential amino acid sequence MAGPLRGLPSRTKSCFSSSSTGSRR*(+)
MKRSNFLSGRGVPVVGPPSDAASPFPVAFDETFFFFSSTSTFTTTAAAGASSSSGACRG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017