Detail information of Os03g0130500_circ_g.1


General Information
CircRNA Name Os03g0130500_circ_g.1
ID in PlantcircBase osa_circ_017767
Alias Os_ciR8603
Organism Oryza sativa
Position chr3: 1720679-1720797  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0130500
Parent gene annotation EF hand domain containing protein. (Os03t0130500-01);Similar to
ESTs AU031435(E61570). (Os03t0130500-02)
Parent gene strand -
Alternative splicing ENSRNA049473927_circ_ag.1 Os03g0130500_circ_g.2 Os03g0130500_circ_g.3 Os03g0130500_circ_g.4 Os03g0130500_circ_g.5 Os03g0130800_circ_g.1 Os03g0130800_circ_g.2 Os03g0130800_circ_g.3 Os03g0130800_circ_g.4 Os03g0130800_circ_g.5 Os03g0130800_circ_g.6 Os03g0130800_circ_g.7 Os03g0130950_circ_igg.1 Os03g0130950_circ_igg.2 Os03g0131100_circ_g.1 Os03g0131100_circ_g.2 Os03g0131200_circ_g.1 Os03g0131200_circ_g.2 Os03g0131200_circ_g.3 Os03g0131200_circ_g.4 Os03g0131200_circ_g.5 Os03g0131200_circ_g.6 Os03g0131200_circ_g.7 Os03g0131200_circ_g.8 Os03g0131200_circ_g.9 Os03g0131200_circ_g.10 Os03g0131200_circ_g.11 Os03g0131333_circ_g.1 Os03g0131333_circ_g.2 Os03g0131500_circ_g.1 Os03g0132000_circ_g.1 Os03g0132200_circ_g.1 Os03g0132200_circ_g.2 Os03g0132800_circ_g.1 Os03g0133000_circ_g.1 Os03g0133300_circ_g.1 Os03g0133300_circ_g.2 Os03g0133300_circ_g.3 Os03g0133300_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0130500-02:1
Os03t0130500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCCTGGGATCTGAAGGAATCGAACCTTCCTAAGTTATATGAGGAGCTATCATCGCGGctttg
gagttgtttatggagtcaaacctggaaaaacgactttcctgagggaagaatccgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGGAGTTGTTTATGGAGTCAAACCTGGAAAAACGACTTTCCTGAGGGAAGAATCCGCTCTC
CTGGGATCTGAAGGAATCGAACCTTCCTAAGTTATATGAGGAGCTATCATCGCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.44842459
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015