Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d020727_circ_g.2 |
ID in PlantcircBase | zma_circ_009373 |
Alias | zma_circ_0002560 |
Organism | Zea mays |
Position | chr7: 130350149-130352794 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d020727 |
Parent gene annotation |
ARP protein (REF) |
Parent gene strand | + |
Alternative splicing | Zm00001d020727_circ_ag.1 Zm00001d020727_circ_g.1 Zm00001d020727_circ_g.3 Zm00001d020727_circ_g.4 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d020727_T012:7 Zm00001d020727_T017:7 Zm00001d020727_T011:7 Zm00001d020727_T015:5 Zm00001d020727_T009:7 Zm00001d020727_T006:7 Zm00001d020727_T021:6 Zm00001d020727_T004:7 Zm00001d020727_T010:7 Zm00001d020727_T008:7 Zm00001d020727_T002:6 Zm00001d020727_T020:6 Zm00001d020727_T001:6 Zm00001d020727_T005:7 Zm00001d020727_T018:7 Zm00001d020727_T007:7 Zm00001d020727_T013:5 Zm00001d020727_T003:5 Zm00001d020727_T014:7 Zm00001d020727_T016:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.112171041 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
130350165-130352791(+) 130350803-130352793(-) |
Potential amino acid sequence |
MAEQMSRKVIDSSGGYLEMEDVVNGTFELIQDESKAGACLWITKRRGMEYWPTPEEQRKYMVNP NKSKRMLTNNIYPSIRMPEFFEKIVVHTLSHNFRNATRLERVQLRFPIKAHSALVKIIYAGVNA SDVNFSSGRYFSGNPKETASRLPFDAGFEGVGIVAAVGDSVSHIKVGTPVALMTFGSYAEFTEV PAKHLLPVPRPDPEVVAMLTSGLTASISLEKAGQMTSGQVVLVTAAAGGTGQFAVQFVQTNMAE QMSRKVIDSSGGYLEMEDVVNGTFELIQDESKAGACLWITKRRGMEYWPTPEEQRKYMVNPNKS KRMLTNNIYPSIRMPEFFEKIVVHTLSHNFRNATRLERVQLRFPIKAHSALVKIIYAGVNASDV NFSSGRYFSGNPKETASRLPFDAGFEGVGIVAAVGDSVSHIKVGTPVALMTFGSYAEFTEVPAK HLLPVPRPDPEVVAMLTSGLTASISLEKAGQMTSGQVVLVTAAAGGTGQFAVQFVQTNMAEQMS RKVIDSSGGYLEMEDVVNGTFELIQDESKAGACLWITKRRGMEYWPTPEEQRKYMVNPNKSKRM LTNNIYPSIRMPEFFEKIVVHTLSHNFRNATRLERVQLRFPIKAHSALVKIIYAGVNASDVNFS SGRYFSGNPKETASRLPFDAGFEGVGIVAAVGDSVSHIKVGTPVALMTFGSYAEFTEVPAKHLL PVPRPDPEVVAMLTSGLTASISLEKAGQMTSGQVVLVTAAAGGTGQFAVQFVQTNMAEQMSRKV IDSSGGYLEMEDVVNGTFELIQDESKAGACLWITKRRGMEYWPTPEEQRKYMVNPNKSKRMLTN NIYPSIRMPEFFEKIVVHTLSHNFRNATRLERVQLRFPIKAHSALVKIIYAGVNASDVNFSSGR YFSGNPKETASRLPFDAGFEGVGIVAAVGDSVSHIKVGTPVALMTFGSYAEFTEVPAKHLLPVP RPDPEVVAMLTSGLTASISLEKAGQMTSGQVVLVTAAAGGTGQFAVQ(+) MLGYILFVSILFDLLGFTIYFLCSSGVGQYSIPRRFVIQRQAPALLSSCISSNVPLTTSSISKY PPDESITLRLICSAILVWTN*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |