Detail information of AT1G67090_circ_g.3


General Information
CircRNA Name AT1G67090_circ_g.3
ID in PlantcircBase ath_circ_008972
Alias 1:25048478-25048639
Organism Arabidpsis thaliana
Position chr1: 25048478-25048639  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G67090
Parent gene annotation Ribulose bisphosphate carboxylase small chain
Parent gene strand -
Alternative splicing AT1G67090_circ_g.2 AT1G67090_circ_g.4
Support reads 2/1/1
Tissues seedling;leaf;flower
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G67090.1:1
AT1G67090.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGTACTCCTTCTTGCACTCTTCCACTTCCTTCAACACTTGAGCGGAGTCGGTGCAACCGAACA
AGGGAAGCTTCCACATTcttggtggcttgtaggcaatgaaactgatgcactggacttgacgggt
gttgtcgaatccgatgatcctaatgaaggcattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGTGGCTTGTAGGCAATGAAACTGATGCACTGGACTTGACGGGTGTTGTCGAATCCGATGA
TCCTAATGAAGGCATTGGGGTACTCCTTCTTGCACTCTTCCACTTCCTTCAACACTTGAGCGGA
GTCGGTGCAACCGAACAAGGGAAGCTTCCACATT
Conservation Information
Conserved circRNAs NA
PMCS 0.5076827
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020