Detail information of AT1G67090_circ_g.4


General Information
CircRNA Name AT1G67090_circ_g.4
ID in PlantcircBase ath_circ_008973
Alias NA
Organism Arabidpsis thaliana
Position chr1: 25048503-25048629  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method circRNA_finder
Parent gene AT1G67090
Parent gene annotation Ribulose bisphosphate carboxylase small chain
Parent gene strand -
Alternative splicing AT1G67090_circ_g.2 AT1G67090_circ_g.3
Support reads 2
Tissues aerial
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT1G67090.1:1
AT1G67090.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTTGCACTCTTCCACTTCCTTCAACACTTGAGCGGAGTCGGTGCAACCGAACAAGGGAAGt
gatgcactggacttgacgggtgttgtcgaatccgatgatcctaatgaaggcattggggtactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGATGCACTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCATTGGGGTACTC
CTTCTTGCACTCTTCCACTTCCTTCAACACTTGAGCGGAGTCGGTGCAACCGAACAAGGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.160108333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017