Detail information of BGIOSGA036295_circ_g.2


General Information
CircRNA Name BGIOSGA036295_circ_g.2
ID in PlantcircBase osi_circ_009678
Alias Chr12:12789799_12795309(MH63RS2), Chr12:12790081_12795309(MH63RS2), Chr12:13415960_13421193(ZS97RS2), Chr12:12790081_12795309(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr12: 10924108-10928199  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA036295
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA036295_circ_g.1 BGIOSGA036295_circ_g.3 BGIOSGA036295_circ_g.4 BGIOSGA036295_circ_g.5 BGIOSGA036295_circ_g.6 BGIOSGA036295_circ_g.7 BGIOSGA036295_circ_g.8 BGIOSGA036295_circ_g.9 BGIOSGA036295_circ_g.10 BGIOSGA036295_circ_g.11 BGIOSGA036295_circ_g.12 BGIOSGA036295_circ_g.13 BGIOSGA036295_circ_g.14 BGIOSGA036295_circ_g.15 BGIOSGA036295_circ_g.16 BGIOSGA036295_circ_g.17
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-NN
Number of exons covered BGIOSGA036295-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTATGTTCATCAATATTGGCAAGAAAAGCTGAGCAAATCTGTGCATTTCCTGCCATGCTTCC
ATTTGTATGGACTTCTCCAGTGGAATATACATGTGCgagcgcttaacaagatcccaactatgta
gcatgggtacctcctgaaatgtactgcatatgtactagacatgatttggtaacttttctttttt
gttcattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCGCTTAACAAGATCCCAACTATGTAGCATGGGTACCTCCTGAAATGTACTGCATATGTACT
AGACATGATTTGGTAACTTTTCTTTTTTGTTCATTTAAAAAAATAAAATAATTGGCAATAACTC
ATTACTTCCTCCCTGGTACCTCTAGGCCAAACCTCTTCCTTGGATGCCCATGGAAAGCCAGTTT
AACTATCCACTTCCTTCGTACCTGGGCTACTTTTTTAACTATCCACTTCCTTCGTACCTAGGCT
ATCCTTCAGAAGCCTGGTTCACGGGATTTGGTTGCAGCAGCGTGTCAGCGCTTGGAGCAGGTGG
TCAGGGAATGTTTTACCTAGGGACATGGGTGGCGGCCTAGCCTGAAGATTGGTGCTCACTAAAT
TTTACTGCTTTCCTTCTCTTGTTACAAACTCTTTTGTGGTTGTGTCTGTGTTTTGGCTGTGTGC
ATCCTAGTTATGCAGAGGCTGAGAGTTTTCTTAGTATGGTCCTATCAACTTGATGTAATTGTCT
AAGATTAATAAAAGCTTCCTTTATCAAAAAAAAAAAAGCCAGTTTAAGGCTGCCAACTCGACAA
CTATCATACAAACTATACAACCTAATCCCCTCCATTGCATATCTAACTTCTATATTTTTAAATT
ATCACACACACGAGCGTGCGCGCGCACGCGAACATGTATCAGTGTTTTAGGGGAAACGGCTTAC
CACGGTATCACCTTATCACGTACTCTAATCAAATGCTCTACACAAAAAGCTTACAGACAGGAAG
CTTTAAACAGGTGGGCTAAAGTACTTCATTACCCAATACTTAATGTATCTCCACTCCAACTGAT
TGTACAATTATATCATGGGGTGAATAACAGTTATATCCAAGTAGGGAGGTTGTCAGCCCATGGG
GTGAATAACAATTAAAAGAATGTAATAAGGATGCGGAAAAAGGTCTCAGTTCTCTCATTATCCT
AGTGGCTTGGGAGATTTGGAAGCATAGGAATGATAATATGTTTTAATGGGGCTAGTCCTAGTGT
TATGGCTGTCATTCAAACTGTAGCAAATGAGTGTAGCTTTTGGTGTTTGGCCGGAGCCACTAAG
CTCGGTGAGTTCCTTAGAAGGTCGCTTACCCCGGTTGGGTAAAGTTGGGTAATGTGAGCCTTTT
GTTTTGTAACTTCTTTTAAGTGCTTGGGGGAGAATGACGCTTTAGTCACTTCCCCGTCTTTTAT
TCCTTCTTAATGAAATGAGCATACTCATGCGTATTCCCAAAAAAAAAATATAAACACTGACAAA
TTAAATGCAAAGCATTTTTTTCATAAAGATTAAGAAATTGAAATTAATACCTGCAAGCTTGCCA
TTTACAAATACACGAGCTACATCACGAATTTTATCTATTGTTAGTGAAGGAAGAACCCCTTTCG
AACTCCAGAATGCAACGTCTGCATCAGAAATATTTACCCTGTTGAATTGAGAAAATGTTAATAG
TAATTATACTGTTGAAAATAATGAGGATTGTCAGCAGACTATACGTGCCATTCAAACTGCATAC
TGGTACAGGACAGTGAACATGACATCATTTGAAGGTACTCTGGGTTGGAATTTGAAATTCTAAA
TAGTGGAAAATAGTCAATATATAGTAATATACACAGTTGAAATTTCATTGAAAAATGAAATTGA
ATGGAGAGCTCAGTCTGCTTTCGTGTTTGCATGCAAGTAGAGTGCTAAAAAATATTCTACATAA
GATAACTGGGAAATTAACACCCAATGTGAGGTCGACAAGTGGGCTTGGGACACTGGCAGTAATA
CTACTAAAATATTGCATTCTCTTTTTGTTATTTGAGGAATCAAATTTTCCCCATGCATAAATCA
TATCACTAGAAATAATACTCCTTTTGGTGCTGATGATCATCACCAATAACATTTTGGGCACGAG
TGTACACACTTGCACACAAAGAAACATTATCAGAATGTGTACTTCAAAATGTCGAGTCAACTAA
TCATGGACTGAATACAAGAAAAATAATAGCAGATGGTTCACTACAGAATCTGATCTCACAAAAT
CATATATTCTCCAACAGCATGTACTCAACACTCACCTGGTAGTATACCACAAGTAGTCAGATAT
GTCCTTCGTTACGTTCAAGTGCTCTAATATTCCCTGAACAGCAAAATTGTTTCCACCCCAAGTA
CCAATAGTCTCTTTAGAAGTCCACCAAGTACTTGAGAGATACGGACCTCCAGATGTAAGTGAGA
GGATACTAGGCTTATGTCTACTTGAACGACTGGGAGACCCAGATTCTACAGTAAAAACTGAAGT
CTGTGCACCAATCTGAAAAATGTACAAGTAAACAATAAGAGATCGATCATTCATTTTATGTCAA
TATTTCATCTACCATGTTTATGTTTGACATTTAGACTGGCATCCAAAATCTTGCAGGCACTTTT
ATGTTGTATCCTAGACTGTGTGACGAACTAAGAAATGCATGAATAACAGGAAAAAAAAAGGCTT
CAGATAAGGTTCTAGATTCCAGTGACAATAAACTACATCAATGGTTGCTGGCATATTCCCTTAA
AAAAGTGGCTCCTGGATACTCCGTATGTCATAATGCAGATGCCATAAAGATTTCATGGGTCAAA
ACATAGACAAATATTTGAGAACAAAATCAGACAAAGATATTATTCTTTGGGACAAAAAAAAATA
CCTGAGCAGTTATAAACTTACACAAATACCGTAAATGGTGATTTAAAAACATTATGCTGTTTAA
GGTTGGTAAAACCTTGGGTGAGGTCATCTTTTAGTTGTGTGTTTTTTCATGTAAAGGCTAAGGC
CTGTTGGTGGTTCGGGTAGGACTTGGGAGCTGCTCCCTCCCCTGTTCCTTTTTTTTCTCTCCCT
TTTTAATAAAATGATACGGAACTCTCTTGTGTTTTCGAGAAAATGGTTGGTAAAACTTCTTTCT
AACCAATTGGTAGCCTTCTGTTCTTGAGGACAGATGGGAACATGTGATTTTAACACTTTCGATT
TTAAATGGATTCTAATAATAATCTGGGAAACTATTTTGTAAAATGAGCTACGCATATATCACAG
GAACTTATAAATGTGCATGCAGTAAATTTCACGGCTTGTATTCCAAAACACTAATTTGTCATGA
AACATAATTAGCATTTGCCACTATCTCTCCTATAATAATATGGGCCCAGGTATTGTAGTGGTGC
AGTGGCATTAATTCCACCCAGCTACACAGCCACCATAATATCACGGGCAACACGAAGTTGAGGA
CAAAAGGTCAACAGGGTGTAATGTAAACATGGGCCCATGGGAGGGCTGCGACGCTGCTCATAGA
GCAGATTTTGGAACTGGTGTATAGTGTGGTGAATAAATTGACAGTTTTAGTATTGTTGATTATC
TCTTTGACGTGTTAAATTCAGTGGATGTGTTGCTACCATATTTTAATATGGAGAATTTACTGAT
AGTAGTAGCATTCTGAACACAGTTTTGTATAACCACTCTGCACAATTCAAATTCCAGTTCGGTC
TGAAAAGTCAACAACATGGGTACTGACTACTGAGACCAGGCCATCACCAAAACCACCACAAAGG
CAGTTCCAGTAGGTTTTTGGTCAGTTTCTGGATAAATATTGAGTATTCAGTTTTGCAAGGTTAA
TTTTTGGTATACTCAATCCAGGTAACAAGTATATGTCAAGGGGATATGTAGGAACTGGACAGAA
ATCTTTAAACCAAAAAATATGGTGTGGGCAATGTGACCACAAACCACTGGAACCACCAGAAGGG
CAGTTCTAGAAAGTTTCTGTGCATTGCAACCTAAACTCAATTGTATTTGCATAAGCATGTGACT
GACTCAACACTTATAGCTTCATAGGAATATTGCATGCAATTAGTGACTACATACCCGTGCAGTA
TTGAAGGCCACATTTTCGCAATCTGGTAGTATGCTCACAGACCATGGTGGTAGACTATAAGATT
TACCAAAGATCCAGACTGATGCATATTTATGTTCATCAATATTGGCAAGAAAAGCTGAGCAAAT
CTGTGCATTTCCTGCCATGCTTCCATTTGTATGGACTTCTCCAGTGGAATATACATGTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021