Detail information of 4_circ_ag.8


General Information
CircRNA Name 4_circ_ag.8
ID in PlantcircBase ath_circ_034380
Alias NA
Organism Arabidpsis thaliana
Position chr4: 16042132-16046106  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G33250_circ_g.1 AT4G33250_circ_g.2 AT4G33250_circ_g.3 AT4G33250_circ_g.4 4_circ_ag.5 AT4G33260_circ_g.1 AT4G33260_circ_g.2 AT4G33260_circ_g.3 4_circ_ag.4 4_circ_ag.5 AT4G33260_circ_g.6 4_circ_ag.7 AT4G33260_circ_g.9 4_circ_ag.10 4_circ_ag.11 AT4G33270_circ_g.1 AT4G33270_circ_g.2 AT4G33270_circ_g.3
Support reads 2
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACCGCTGCAGTCTGATCCTTACCTTTTCTTCCTTCAGTGAGGGCAAAGTGAGCATAGTCAAA
ATTCATCGCTGATCTGTTCGGTATGAACCTGTCCAGttgacggttggatgcagaatcccacagc
tggacttcagagttgttgagtccaactgcaacatgacgaccatcaggagcccagttgatacttg
tgacaggt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1098
Transcript exons: 16042132-16042401,16042504-16042782,16045456-16045725,16
045828-16046106
TTGACGGTTGGATGCAGAATCCCACAGCTGGACTTCAGAGTTGTTGAGTCCAACTGCAACATGA
CGACCATCAGGAGCCCAGTTGATACTTGTGACAGGTCCCTTCTCCTCATCAATGGTCACAAGCT
CAGATGTAGAACCAGTGGAAGCATCCCACAAGTAGACAGTGTGGTCCAACGCTATGGCTAAGAC
ATTTGCACTTCCCCAGTCCAGCAAGTTGAGGTAGAAATCGTCAACAATGTCAGGTGCATCCAAG
GTTCTCTCAGAAGTCTGAGGAATGTATCGACGAGGCTTTACAGATTTGGGTTGTTGGTGAAGAG
AAGCAGAGTGATTGCTCGGAAGCAGTTCGACAGGAGCCTGAGGTTTGTTTCTGAAGGCGAGAAT
CCTTGTGTGGTTCAAGTTCATGGTCTCAGCCAATTGCTTCCTGTAGGCCTCTTTGGATGGTGAA
CTTACCGTTGCAGATTGATCCTTACCTTTTCTTTCTTCAGTGAGGGCAAAGTGAGCATAGTCAA
AATTCATCGCTGATCTATTCGGTATGAACCTGTCCAGTTGACGGTTGGATGCAGAATCCCACAG
CTGGACTTCAGAGTTGTTGAGTCCAACTGCAACATGACGACCATCAGGAGCCCAGTTGATACTT
GTGACAGGTCCCTTCTCCTCATCAATGGTCACAAGCTCAGATGTAGAACCAGTGGAAGCATCCC
ACAAGTAGACAGTGTGGTCCAACGCTATGGCTAAGACATTTGCACTTCCCCAGTCCAGCAAGTT
GAGGTAGAAATCGTCAACAATGTCAGGTGCATCCAAGGTCCTCTCAGAAGTCTGAGGAATGTAT
CGACGAGGCTTTACAGATTTGGGCTGTTGGTGAAGAGAAGCAGAGTGATTGCTGGGAAGCAGTT
CGACAGGAGCCTGAGGTTTGTTTCTGAAGGCGAGAATCCTTGTGTGGTTCAAGTTCATGGTCTC
AGCCAATTGCTTCCTGTAGGCCTCTTTGGATGGTGAACTTACCGCTGCAGTCTGATCCTTACCT
TTTCTTCCTTCAGTGAGGGCAAAGTGAGCATAGTCAAAATTCATCGCTGATCTGTTCGGTATGA
ACCTGTCCAG

Transcript length: 1680
Transcript exons: 16042132-16042401,16042504-16042782,16044793-16045374,16
045456-16045725,16045828-16046106
TTGACGGTTGGATGCAGAATCCCACAGCTGGACTTCAGAGTTGTTGAGTCCAACTGCAACATGA
CGACCATCAGGAGCCCAGTTGATACTTGTGACAGGTCCCTTCTCCTCATCAATGGTCACAAGCT
CAGATGTAGAACCAGTGGAAGCATCCCACAAGTAGACAGTGTGGTCCAACGCTATGGCTAAGAC
ATTTGCACTTCCCCAGTCCAGCAAGTTGAGGTAGAAATCGTCAACAATGTCAGGTGCATCCAAG
GTTCTCTCAGAAGTCTGAGGAATGTATCGACGAGGCTTTACAGATTTGGGTTGTTGGTGAAGAG
AAGCAGAGTGATTGCTCGGAAGCAGTTCGACAGGAGCCTGAGGTTTGTTTCTGAAGGCGAGAAT
CCTTGTGTGGTTCAAGTTCATGGTCTCAGCCAATTGCTTCCTGTAGGCCTCTTTGGATGGTGAA
CTTACCGTTGCAGATTGATCCTTACCTTTTCTTTCTTCAGTGAGGGCAAAGTGAGCATAGTCAA
AATTCATCGCTGATCTATTCGGTATGAACCTGTCCAGCTGGGCCATATATAGAACTCTTGATGT
ATGACCAGTGAGCTCAGCCATTTTCACCATGGATGGATACTTCCAAAGTGTGAGCTGATTCTGT
GTAAACCCGTGTGAGCTAAGCAACTCTCTTTCATTCTTGCTCCATAACAACGAACAAACTTGGG
AACCAGTGTCTACTGAATTCAAGCAAGCCCCAGTGTGAGTATTCCAGAACTTGATCGTCCTGTC
TCCTCCACCACCACCAGTTGCAAGCAAATTCGCTTGGAAAGGGCACCACGCAAGAGCCTTCACA
GCAGATGTATGTTCCTCAAGCCTGTGCAGCCATTGTGTGGTTGAGTTTGAGGAAGCGACAGAAC
GATCCCAGATGTGTACCACATTGTCGTTGCCACCACTTGCTAGTTGTTGTCCAGATCCTGACCA
CTTGAGCCCACAAACTTCTTGAGTGTGACCTCTGTAAGTTTCCACAATGGGTGATCTGATCCTC
ACATCATTGTTGATGATCAGTCCATCCATTCCTCCAGTAGTAAGGATGTGATTGTTCCATGCCA
GTGATCCTACTCGTGACTGGTGACCACCCTTCAATGTTCTCAGTTGACGGTTGGATGCAGAATC
CCACAGCTGGACTTCAGAGTTGTTGAGTCCAACTGCAACATGACGACCATCAGGAGCCCAGTTG
ATACTTGTGACAGGTCCCTTCTCCTCATCAATGGTCACAAGCTCAGATGTAGAACCAGTGGAAG
CATCCCACAAGTAGACAGTGTGGTCCAACGCTATGGCTAAGACATTTGCACTTCCCCAGTCCAG
CAAGTTGAGGTAGAAATCGTCAACAATGTCAGGTGCATCCAAGGTCCTCTCAGAAGTCTGAGGA
ATGTATCGACGAGGCTTTACAGATTTGGGCTGTTGGTGAAGAGAAGCAGAGTGATTGCTGGGAA
GCAGTTCGACAGGAGCCTGAGGTTTGTTTCTGAAGGCGAGAATCCTTGTGTGGTTCAAGTTCAT
GGTCTCAGCCAATTGCTTCCTGTAGGCCTCTTTGGATGGTGAACTTACCGCTGCAGTCTGATCC
TTACCTTTTCTTCCTTCAGTGAGGGCAAAGTGAGCATAGTCAAAATTCATCGCTGATCTGTTCG
GTATGAACCTGTCCAG

Genomic sequence TTGACGGTTGGATGCAGAATCCCACAGCTGGACTTCAGAGTTGTTGAGTCCAACTGCAACATGA
CGACCATCAGGAGCCCAGTTGATACTTGTGACAGGTCCCTTCTCCTCATCAATGGTCACAAGCT
CAGATGTAGAACCAGTGGAAGCATCCCACAAGTAGACAGTGTGGTCCAACGCTATGGCTAAGAC
ATTTGCACTTCCCCAGTCCAGCAAGTTGAGGTAGAAATCGTCAACAATGTCAGGTGCATCCAAG
GTTCTCTCAGAAGTCTGTTAATCACAACAGAAAGTTTAGCAACAGATCAATACAACTCTAATGC
AGCAACCAGTAAGTGAGCTTTAAGGATCAAACGCAATAAATACAGTACATACCTGAGGAATGTA
TCGACGAGGCTTTACAGATTTGGGTTGTTGGTGAAGAGAAGCAGAGTGATTGCTCGGAAGCAGT
TCGACAGGAGCCTGAGGTTTGTTTCTGAAGGCGAGAATCCTTGTGTGGTTCAAGTTCATGGTCT
CAGCCAATTGCTTCCTGTAGGCCTCTTTGGATGGTGAACTTACCGTTGCAGATTGATCCTTACC
TTTTCTTTCTTCAGTGAGGGCAAAGTGAGCATAGTCAAAATTCATCGCTGATCTATTCGGTATG
AACCTGTCCAGCTGGTAGAAGATAAAAGCAAATCAGTACAATTCATTCGATATCACAAATCCAA
TTTATGCAAGAAACAATCAATCAATTGGAAAGACATGATTTTTCTTATAACAAAACCAACAATT
CGTTCATACAGTATCTGAATAAAGATTCATCAATGATATGGGTCAAACAATTTTGGATTCAGAT
GAACAAGTTGTTAATCAAAACACTAATTCTGTATCATAAACATGGTATTGAATCTGAAAAATTA
AAGAGCACCCACACAATTCGAATCCTGATTCTCAACAGAGTACGGAAACAGGTCAAATCTGAAT
GATTGAAGAAGGATACTTACATTTTCCTTGGAATTTTTTCTGGGAAGAAAGTGTTCTTGAAGTG
GGCACCGATTCAAACCTGCATCCATTATCACTAAACACAAAGAAAATCCCAAAATACAAACAAA
CAGAAAACAAGAATAGCGATAGTATACGAAACGGATTAGAAGATATAATGAGTAAACGAAATTA
GATAAAGATGAGCCTGCAGAGAAGGGATCGTTAGTAAATTCGAGCAGAGAGATCAGAGCAGAGA
GAGCGAAGAATTGTTGGTGGCTGATGATTGATGAGAGATGAGAGAGCAGATTGATGAAGTGAGT
GAAAAGGTACGAAATTTTGGGTTGCTTATAAAGGGGTAGAGCCAATTTAGGGTTTTGGAGGACT
CTAATTTCTATAATCGGAAAGTCGGTAACGGCTATATTTCTGAGAGAGCCGTTGATCAATTACG
GAAAATGCCCTCTTTCCCTGAAACAATTAGCTTTTTTATGTCTCATTTTAACATTTGTCTATTA
GACAAAAACAGAGACATGTAACAAAAATAAAAAAACATTAAAATACTTATAGATATTATACAAA
ACAAATAAAACACTGCTTACCACTCACTCAAAAAAGATACTGAAATAACTATTGGTACAAAAAA
GAGGTTAACACTCACATAAATACCACAATTACCTTTAATCTAGAATTATTACTGAAAAAAAACA
AATACAATAGTGAAAAAGTTTCATACGGTAAATAGACCATAATAACAATTTATCATCTACCTAA
TACCATCCAAAATTAGTTTCAAATTGTATACGAGAACCATCCAACGTATTTCGATGTATGGTCC
TTGTAAATAATAATTTTTGTATTAACCTCGATAATATTTGGTTAGGTTATTGTGTGATTGAATA
TTTGCTTTATGGTTAAATAATGGTTATTGTGTGATCGGTATTTTTCACCTATAATATTGTTTTA
GTATTATTTTAATCATATAAAAAATTTATATCCAAAAAAAGCATTTGTTAATCAATTCATTAAC
CTGAAAACATAACAAGTGGTTTAAAAACATAAAACCAAAATCTTCTAAAATCCCTGAAATTACA
TAAGCTAGCGGAAAAAATAAAATCTTCCAAAATCCCTAATCGAACACATGTTTCTACACACTAA
TGTGATTAGGTTAGTGTGGTTTCAATGTCTATTTTGATGTAGTTACAATTATCATCTTACAGTT
TACAGTACTTAATGCTCCTGCTTCTTGTATCATCTGACATATATAATCAAGATCTTTCTTTCTA
TTCAAATGCAAGCAAATAAGTTTGACTCAACAATATATATCATTTACATATATATAATTGTACA
ATATGCACTTTTCTTGTCACTACAATTCATGAAGAATGAATCAGATGCAAAAAAAATGAATATT
TTGCATCTGTATCATGGGTTTCCTTGTCCGTCAGTCTTCACAGCTTCAACGAATACGATTCACG
TGAGAAAATGGCTCGGAAACTGCTTTTGGAGCAGCTTTTTTGGCGGTCTCTGGTACTCCAAAAA
CATTCCAGAACCTCAGAGTCTCATCTCCTGCTGCTGAAGCTACGGTACAACCATCTGGACTCTG
TAAGAAATACAACACAAACAACACAAGTTTTAGGACTAAAGACCTCAAACATCTCCAACTACTT
TCAACAGTTAAAAATTGATTTAGTTGTTTTCCTTTACCTGGGCCATATATAGAACTCTTGATGT
ATGACCAGTGAGCTCAGCCATTTTCACCATGGATGGATACTTCCAAAGTGTGAGCTGATTCTGT
GTAAACCCGTGTGAGCTAAGCAACTCTCTTTCATTCTTGCTCCATAACAACGAACAAACTTGGG
AACCAGTGTCTACTGAATTCAAGCAAGCCCCAGTGTGAGTATTCCAGAACTTGATCGTCCTGTC
TCCTCCACCACCACCAGTTGCAAGCAAATTCGCTTGGAAAGGGCACCACGCAAGAGCCTTCACA
GCAGATGTATGTTCCTCAAGCCTGTGCAGCCATTGTGTGGTTGAGTTTGAGGAAGCGACAGAAC
GATCCCAGATGTGTACCACATTGTCGTTGCCACCACTTGCTAGTTGTTGTCCAGATCCTGACCA
CTTGAGCCCACAAACTTCTTGAGTGTGACCTCTGTAAGTTTCCACAATGGGTGATCTGATCCTC
ACATCATTGTTGATGATCAGTCCATCCATTCCTCCAGTAGTAAGGATGTGATTGTTCCATGCCA
GTGATCCTACTCGTGACTGGTGACCACCCTTCAATGTTCTCAGCTGCAAGTATATGATAAAACA
CATGAGACTAAGAACACCGGATATTATATCTCAACATAAAAGAGAGAGAGTAGTAATTACTTGA
CGGTTGGATGCAGAATCCCACAGCTGGACTTCAGAGTTGTTGAGTCCAACTGCAACATGACGAC
CATCAGGAGCCCAGTTGATACTTGTGACAGGTCCCTTCTCCTCATCAATGGTCACAAGCTCAGA
TGTAGAACCAGTGGAAGCATCCCACAAGTAGACAGTGTGGTCCAACGCTATGGCTAAGACATTT
GCACTTCCCCAGTCCAGCAAGTTGAGGTAGAAATCGTCAACAATGTCAGGTGCATCCAAGGTCC
TCTCAGAAGTCTGTTAATCACAACAGAAAGTTTAGCAACAGATCAATACAACTCAAAAGCAGCA
ACCAGTAAGTGAGCTTTAAGGATCAAACGCATTAAATACAGTACATACCTGAGGAATGTATCGA
CGAGGCTTTACAGATTTGGGCTGTTGGTGAAGAGAAGCAGAGTGATTGCTGGGAAGCAGTTCGA
CAGGAGCCTGAGGTTTGTTTCTGAAGGCGAGAATCCTTGTGTGGTTCAAGTTCATGGTCTCAGC
CAATTGCTTCCTGTAGGCCTCTTTGGATGGTGAACTTACCGCTGCAGTCTGATCCTTACCTTTT
CTTCCTTCAGTGAGGGCAAAGTGAGCATAGTCAAAATTCATCGCTGATCTGTTCGGTATGAACC
TGTCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.464367421
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017