Detail information of Os03g0861100_circ_g.5


General Information
CircRNA Name Os03g0861100_circ_g.5
ID in PlantcircBase osa_circ_022837
Alias NA
Organism Oryza sativa
Position chr3: 36352787-36354327  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0861100
Parent gene annotation Conserved hypothetical protein. (Os03t0861100-01)
Parent gene strand +
Alternative splicing Os03g0861100_circ_g.1 Os03g0861100_circ_g.2 Os03g0861100_circ_g.3 Os03g0861100_circ_g.4 Os03g0861100_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCCTCCCACATGTATTAATCAGCAAACACATATCACACCAAAGAAAAATGAACTACAACCA
CAAAGTACGAAAGATAAATTTGTTATTTGCTGTCCTgtattattgcgttattttctgctttacc
tattaaatgtttcatttttcttcctgttgctcctcatgttttccatccttttggacctcataaa
atatttct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1541
Transcript exons: 36352787-36354327
GTATTATTGCGTTATTTTCTGCTTTACCTATTAAATGTTTCATTTTTCTTCCTGTTGCTCCTCA
TGTTTTCCATCCTTTTGGACCTCATAAAATATTTCTAAATGATCAAATGATCCTAAGTTAATAC
TGTTCTAGATTTCATCCTTTTGTCTAGCAGAACTCATACTTCCTCAGTTTCCCCATTCTAACTG
ATATAATACTTTTTAGGAAGGACTAAATGCCTTTATTACACTGCCTGCCCCTGTAAATGCCATG
TCTCCGGAACACCAGTGCACTGCTGCAATAAGAAATTGATGGGCATCTGGTGGAAAATGTTGTC
TAAAAATGACAGTTATTTGCTAAACTAATTGATGAAAACAGCATTTATTCCCTCAGAACCTAAA
GTTTAGTTCTCAGATTATGGCAGTAAAACTTTTAAAACATCTACTTCCTCTGATCCAAGATATA
AGATGTCCTTACGCAGTTGTTCCACTAGAAGCAGTGGAGTTTGTCAAGAGGGGAGACAATTGTA
GCGGTCACTAGGTATTAGGTAATAAGGACAGTTTAGAAAGTAAATGCTTAGGAACGGCAAAGCA
ATAGCTATTTGCAGATTGAAACTTGGGAAGTAAAGTCACAAAGTTTAGTTTGGACCAGAGGTGG
GTTTTTTCCCCCGCATGTTTTTTTCTAAAATTTTTAATAGAGGCTTCTTTCATTATAAAATATC
CAGCATTATACTCCCTCCGTACCAAAAAGAGTGTCATTTTAGCTTTTGGATTTGTCCCACAAAG
AGTGTCTTTTTAGCTGTGTTGTCCACTAGACCTCTTAATACCACTTCTTTTTCTTCTCGTTTTA
GCCATCCAACCATTAGTACTCCCTTCTCCTCGTTTTCTCCCCCTCGTCGTTCTCTCTGCATTAA
TGGAGGGGCATGGTAGTCTTTTGGACTCTTGCTTGATATTCCTTTTGACATTCTTAAAATAAAT
GCTTTTTGGGATGGAGGGAAGCCCATTTACAATTCCTACACTTGGTCACGCTACACCGTGAACA
AAAAGCACGAGAGGATCATGGCTCATCATTCGCCAAGCCTCACTGTAGCATGCTAAACATACAC
TTTATAGCACAAAAGATAACTACAATGGCCATCTACGTTTTGAGCAACCCACTAAAATCCTGAT
GTCCAATGATGTTTTGAGCTTCTTCAGGGTCAGTTTCATCGAGGTGGAGCTCCTGCGTGATTCT
CCAAAAATCCCAATATAACAAAGCATGACTTGTAACTTCTTTTTCTGACACAGTACTCTCCATT
TACTTAGCATCTGGGAAAGCCTGTGATGTATCATCAAACCAATCCATGGCTTCTTTTGAAAATA
CATATCATTCTGAGTTCTCCAAATTAAAGCAGAGCTAGTAATAGTTGAAATGATATTTTAGATA
TACTTAGCCAAAGACTAGCATTAAATTCATACATCTTCCTCCCACATGTATTAATCAGCAAACA
CATATCACACCAAAGAAAAATGAACTACAACCACAAAGTACGAAAGATAAATTTGTTATTTGCT
GTCCT

Genomic sequence GTATTATTGCGTTATTTTCTGCTTTACCTATTAAATGTTTCATTTTTCTTCCTGTTGCTCCTCA
TGTTTTCCATCCTTTTGGACCTCATAAAATATTTCTAAATGATCAAATGATCCTAAGTTAATAC
TGTTCTAGATTTCATCCTTTTGTCTAGCAGAACTCATACTTCCTCAGTTTCCCCATTCTAACTG
ATATAATACTTTTTAGGAAGGACTAAATGCCTTTATTACACTGCCTGCCCCTGTAAATGCCATG
TCTCCGGAACACCAGTGCACTGCTGCAATAAGAAATTGATGGGCATCTGGTGGAAAATGTTGTC
TAAAAATGACAGTTATTTGCTAAACTAATTGATGAAAACAGCATTTATTCCCTCAGAACCTAAA
GTTTAGTTCTCAGATTATGGCAGTAAAACTTTTAAAACATCTACTTCCTCTGATCCAAGATATA
AGATGTCCTTACGCAGTTGTTCCACTAGAAGCAGTGGAGTTTGTCAAGAGGGGAGACAATTGTA
GCGGTCACTAGGTATTAGGTAATAAGGACAGTTTAGAAAGTAAATGCTTAGGAACGGCAAAGCA
ATAGCTATTTGCAGATTGAAACTTGGGAAGTAAAGTCACAAAGTTTAGTTTGGACCAGAGGTGG
GTTTTTTCCCCCGCATGTTTTTTTCTAAAATTTTTAATAGAGGCTTCTTTCATTATAAAATATC
CAGCATTATACTCCCTCCGTACCAAAAAGAGTGTCATTTTAGCTTTTGGATTTGTCCCACAAAG
AGTGTCTTTTTAGCTGTGTTGTCCACTAGACCTCTTAATACCACTTCTTTTTCTTCTCGTTTTA
GCCATCCAACCATTAGTACTCCCTTCTCCTCGTTTTCTCCCCCTCGTCGTTCTCTCTGCATTAA
TGGAGGGGCATGGTAGTCTTTTGGACTCTTGCTTGATATTCCTTTTGACATTCTTAAAATAAAT
GCTTTTTGGGATGGAGGGAAGCCCATTTACAATTCCTACACTTGGTCACGCTACACCGTGAACA
AAAAGCACGAGAGGATCATGGCTCATCATTCGCCAAGCCTCACTGTAGCATGCTAAACATACAC
TTTATAGCACAAAAGATAACTACAATGGCCATCTACGTTTTGAGCAACCCACTAAAATCCTGAT
GTCCAATGATGTTTTGAGCTTCTTCAGGGTCAGTTTCATCGAGGTGGAGCTCCTGCGTGATTCT
CCAAAAATCCCAATATAACAAAGCATGACTTGTAACTTCTTTTTCTGACACAGTACTCTCCATT
TACTTAGCATCTGGGAAAGCCTGTGATGTATCATCAAACCAATCCATGGCTTCTTTTGAAAATA
CATATCATTCTGAGTTCTCCAAATTAAAGCAGAGCTAGTAATAGTTGAAATGATATTTTAGATA
TACTTAGCCAAAGACTAGCATTAAATTCATACATCTTCCTCCCACATGTATTAATCAGCAAACA
CATATCACACCAAAGAAAAATGAACTACAACCACAAAGTACGAAAGATAAATTTGTTATTTGCT
GTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.201818424
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017