Detail information of Os03g0861100_circ_g.2


General Information
CircRNA Name Os03g0861100_circ_g.2
ID in PlantcircBase osa_circ_022834
Alias NA
Organism Oryza sativa
Position chr3: 36350168-36355908  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0861100
Parent gene annotation Conserved hypothetical protein. (Os03t0861100-01)
Parent gene strand +
Alternative splicing Os03g0861100_circ_g.1 Os03g0861100_circ_g.3 Os03g0861100_circ_g.4 Os03g0861100_circ_g.5 Os03g0861100_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0861100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGGCTTCAGGAAACTTTTGAAGTTTGGTAGGAAGAGCCACACATCAGGTACAATGGATTCTG
ATGCATCATCTGTTGACGGAGCCTTAGCCGGAGACGagttcaattacttagagttctggagact
cgcaaaattgtcttacgtaaggagcaggctatggcctttgcgcgtgctgtagcggctgggttta
atattgac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 3143
Transcript exons: 36350168-36350320,36350763-36350974,36351294-36352786,36
354374-36355297,36355548-36355908
AGTTCAATTACTTAGAGTTCTGGAGACTCGCAAAATTGTCTTACGTAAGGAGCAGGCTATGGCC
TTTGCGCGTGCTGTAGCGGCTGGGTTTAATATTGACAACCTGGGATTTTTGATCACATTCGCAG
ACCGTTTTGGTGCTTCACGCTTGATGAAGGCATGCACACAGTTCACTGAGTTGTGGAGAAGAAA
GCATGAAACTGGCCAATGGATTGAAGTTGAACCGGAGGCAATGTCTGCACGGTCTGAATTTCCT
CCCTTTAATGCTTCTGGAATTATGTTTATGGGAGACAACATGAAGCAAAACCTGGAAACGCTTT
CTATTTCGAATGGAGATGCAAATGGTGAAGATGCTGCTAAAGCTGATCAGAGGACAGCTCAGCA
CTCAGGAGCTCCCAGCGAATACCTCCATGGTCCATATCAATCAGCATATCCACCATGGGCAATT
CATCCACCATATCCCATGCAAGGCATGCCTTACTACCCTGGGGTGAACCCATACTACCCTCCAC
CCTACCCCCCAATGGATGATCCTAGGTACCACCACTCAGAGAGGAGAGTATCAAGGAAGCACTC
GTCAGATAGCAAGGACTCAGAAACATTGGATGATGAAAGTGGCCAGAGTGGTTCAGAGATAGAG
AGCTCTCATGGCCACAAGTTGCATAAAAAGGGCAAGCGATCAGGCAAGAAGAAACCCAGTGTAG
TTGTCATAAGGAACATCAATGTGACGTCAAAAAAGCATGGCTCATCAGAGAGCGAGTCACAAAC
GAGTTCTGATGTAGCATCTGAGGACAGTGATGATTCACACACTGAATACAGCAAGCGAAAGAAT
AAGAGATCTAGTTCAAAGAAAAAGGAGAGCAGAAAAATCATTCTTGAGCCTGGAGATGAGTATA
GCAGGGATGAAGTAGCTCACAGGCAAGATGGAGACCAAGGAAACTGGAATGTCTTCCAGAGTTT
CTTGCTAAGAACTGAAGAGAAGACAAAAGATAATGACGCAGACCTATTTGCTACTGAGAGAGGA
CCACCGCCAGCAAGAAGGAAAGAAAGCAGAACCACTGATGATCCTCTTCTTTTAGTGGAGCGAG
ATTCTACCGATTTCAATGAAGGGAAGACAATTGGTTTCAATTCAGCCCATGGGAGGATTAGGTC
CAGGAAAATGCTGTCTGGTGACGAACTTGTGATCTCGGCTGAAGGTAGGAGTTTTGTGGATGGC
GATATTAAGGAGATAGAAGCTGGAGGTGGAGGATACAGGAGAGGAGCAAGTGAAGACTTCATCG
TTTATGGTCAGGAAAAGCCAATGGACAGTGGGAGTTATTTGGATCCTCTTGCAGAGGGACAGTA
CAAGAGTCCAACCCTGATGGAAAAGAACATGCATAGTGTGGCTGATGAGTCCTTTATGATACCT
GTTAGGTCTAACTCACAGGATAATCTTGGACCAGAAAGCTGTACCGCCATTGATATAGATGTTG
AGCTTCCTGGAACTGTTAAGAAGACAACAGATGCAAAGGCTGGAGACCAACTTTTCTATGAGCC
CGATGAGTTGATGCCAGAGCGTGAATATGAAGATGTCACATATGGATATGATCCAGCAATGGAC
TATGATAGCCAGATGCAGATTCAACCTGCCATCATGGTTGAAGATGCAAATGCGGATGATGTAT
CACTGGGGGTTGAGGGTGAAGTAAAGAAGCTAGAGAAAGATAAGAAGCTTAGATTACAGGAATG
TTTGGATAAAAAGAAGGATGCTTCGGCCAGGAGATTGCCATCGTCAAAAACCCGGCTAACAGAT
GCACAGAAACGTGCACAAAACCTGCGGGCATATAAAGCAGACCTTCAAAAGGCAAAGAAAGAGC
AGGAAGAGGAACAGATTAAACGGCTGGAAAGGCTTAAGCAAGAGAGGCAGAAGAGGATTGCTGC
AAGAAGTAGCACATCTAATTCAATATCAACACCACAGCAGGTCAAAGTGAAACCTTCACCAAAG
ACTTCTCCCAGTACCTACAAGAGTTCAAAGTTTAGTGATGCTGAACCAGGATCCTTTTCACCTC
TAAGAAAGCTTCCTGCTAGAACTACTGCAGAGAGTGACCATCAGAAAACAGGAAAAGCTAGCAA
ACTAAGCGATAGTAGTACAAATGCAGTGAGTAAATCAACCTCATCATTGGCAGCGATGAAGAAA
GAGAAAAATGGGAGAAATGAATTGTCCAGTGAGAGATTGAAGAAACTTGCTGAACCTAAAAGTA
ATGCTTTGACCGACCGTCCTTCAAATTCAAAGTTTGCTAGCATGGACCATTCACGAAGGAAAAG
CATGCCAGAAGATACCCAAACAAAGAAAATATCTGCTATAATGCAGCTCGACCAGAGGAAATCA
GCAACTCTACCAGAACTCAAAGTCAAATCTCCACGAGCTCCCTCTATATCTGTGAAAAATAAGA
CAATTGCTAGAGAAATAAGGGATGGGGATCCTGGAGGTAAATCACCTCCCACTTTAGAAGTTAC
AGATGGAAAGAAAGCTGATGTAGAAGTCTCCAGGATAAGCAACAGTGATGATAATGTGGTGGTT
GAGAAGACTGTTGTGATTCTTGAAAATGAGGTGGTTTCAACACCTCCTCTCATTCTACCTCCTG
GAAGAACATCAGAGAATGAAACTTCTAGCAATGACAGAACACAGAAGCCCAGTATGGAATTGGA
GTACACTGCCATCAGGGCTCCACCTTCTCCAGCTGTTCTTCCTGAAGCTGAGAACCCCACCATC
CATAGACACAATGACCAGGGTAATTACGAGGTGATGACGGAGCATCTGAAGGATGAGACTGAGG
AATTGACCTTGTCTGCTGTGGAGAAACCCTACCAGGCCCCTTTTGCTAGGGTGACATCGTTGGA
GAATGATTCAGCCACCATTCATGCTTACCCCCATGCACTACCAGTTGAATCTGAAACACCTGTG
CATGCCGAGAGCATTAGGGCTCGAGTACTAGACCCAGTATCGACAGTTTCAGTGGAGGAGACCC
CTGAAGCAAATGAAAAACCTCGTAATAAGGAATCAAAAGGCTTCAGGAAACTTTTGAAGTTTGG
TAGGAAGAGCCACACATCAGGTACAATGGATTCTGATGCATCATCTGTTGACGGAGCCTTAGCC
GGAGACG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.217284759
Functional Information
Coding potential Y
Potential coding position 36350227-36350244(+)
Potential amino acid sequence MAFARAVAAGFNIDNLGFLITFADRFGASRLMKACTQFTELWRRKHETGQWIEVEPEAMSARSE
FPPFNASGIMFMGDNMKQNLETLSISNGDANGEDAAKADQRTAQHSGAPSEYLHGPYQSAYPPW
AIHPPYPMQGMPYYPGVNPYYPPPYPPMDDPRYHHSERRVSRKHSSDSKDSETLDDESGQSGSE
IESSHGHKLHKKGKRSGKKKPSVVVIRNINVTSKKHGSSESESQTSSDVASEDSDDSHTEYSKR
KNKRSSSKKKESRKIILEPGDEYSRDEVAHRQDGDQGNWNVFQSFLLRTEEKTKDNDADLFATE
RGPPPARRKESRTTDDPLLLVERDSTDFNEGKTIGFNSAHGRIRSRKMLSGDELVISAEGRSFV
DGDIKEIEAGGGGYRRGASEDFIVYGQEKPMDSGSYLDPLAEGQYKSPTLMEKNMHSVADESFM
IPVRSNSQDNLGPESCTAIDIDVELPGTVKKTTDAKAGDQLFYEPDELMPEREYEDVTYGYDPA
MDYDSQMQIQPAIMVEDANADDVSLGVEGEVKKLEKDKKLRLQECLDKKKDASARRLPSSKTRL
TDAQKRAQNLRAYKADLQKAKKEQEEEQIKRLERLKQERQKRIAARSSTSNSISTPQQVKVKPS
PKTSPSTYKSSKFSDAEPGSFSPLRKLPARTTAESDHQKTGKASKLSDSSTNAVSKSTSSLAAM
KKEKNGRNELSSERLKKLAEPKSNALTDRPSNSKFASMDHSRRKSMPEDTQTKKISAIMQLDQR
KSATLPELKVKSPRAPSISVKNKTIAREIRDGDPGGKSPPTLEVTDGKKADVEVSRISNSDDNV
VVEKTVVILENEVVSTPPLILPPGRTSENETSSNDRTQKPSMELEYTAIRAPPSPAVLPEAENP
TIHRHNDQGNYEVMTEHLKDETEELTLSAVEKPYQAPFARVTSLENDSATIHAYPHALPVESET
PVHAESIRARVLDPVSTVSVEETPEANEKPRNKESKGFRKLLKFGRKSHTSGTMDSDASSVDGA
LAGDEFNYLEFWRLAKLSYVRSRLWPLRVL*(+)
Sponge-miRNAs osa-miR413
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017