Detail information of Os10g0457600_circ_g.1


General Information
CircRNA Name Os10g0457600_circ_g.1
ID in PlantcircBase osa_circ_006993
Alias NA
Organism Oryza sativa
Position chr10: 16776899-16777969  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0457600
Parent gene annotation Similar to Acetyl-CoA C-acyltransferase (3-ketoacyl-coa thiolase
b) (EC 2.3.1.16) (Fragment). (Os10t0457600-01)
Parent gene strand +
Alternative splicing Os10g0457600_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0457600-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTCATATATTGATGTTTAGGTTGAGTCCCACAGGAAGGCTGCGGCTGCAGCTGCTTCTGGT
AAATTCAAGGAAGAAATTGTTCCAGTTCACACGAAGtgcctataggacagcaatttgcaagtcc
aagagaggtggtttcaaggatactcccgcagaggacctcttggttccagtattcaaggtttgta
tttgttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCCTATAGGACAGCAATTTGCAAGTCCAAGAGAGGTGGTTTCAAGGATACTCCCGCAGAGGAC
CTCTTGGTTCCAGTATTCAAGGTTTGTATTTGTTATCATATACTCATTTTCTCCCAACTTGACA
ATTAGTGAACTGGTTGCTTCTGTCTCGACCTTTGGTCTCATTCTCATATATTTTGCCTCCCAAC
TACAGGCTTTGATAGATAAAACGAAGTTGAACCCAAGTGAAGTTGGTGATATTGTTGTTGGTAC
TGTTTTAGCTCCTGGGTCCCAAAGGGCAATTGAATGCAGAATGGCTGCATTTTATGCTGGATTC
CCTGGTAAGAGTCATAATAAACATTATCATGTTTGCCATTAATATTGGACTGTCATCATTCTCA
ACTTGATTAATTTGTTTTGTATGCTCCAGATACCGTTCCTCTTATGACTGTAAACAGGCAATGT
TCGTCTGGGCTTCAAGCAGTTGCAAATGTTGCTTCTAACATTAAAGCAGGACTTTATGACATTG
GTATGATCCGCTGGTGGTTAATCTTAAGAAGTCCTTTTTGTGAGGAGAAGTTTGAAAAAAAAAT
TCATGGTGAACTGACTTTTGTTATTTATTCAAGGTATTGCTGCTGGCCTAGAGTCCATGACAGT
GAACCAAGTTCGCCTTGATGGGCAAGTGAACCCCAAAGTATGTGAAACATGATGGTCAATGCAG
CAAGATAATCTTTGGATGCACGTGTAAAGATATTTGAGCTTGATTTTTTTTTGGCTGAAATCTC
CCGCTATTTTAGGTTGAGCTGTTTTCTCAAGCACGCGATTGCCTTCTCCCAATGGGCCTCACGT
CCGAGAATGTTGCAAAACGATTTGGCATAACACGAATGGAGCAAGACCAGGCTGCTGTAGGTTG
CCTTATCAATTCTTTCTTTGGACATGTGTATTGATACACAGTGAAGTGTTGCACAATATGATTC
TTTCCCTTATTATTTTCATATATTGATGTTTAGGTTGAGTCCCACAGGAAGGCTGCGGCTGCAG
CTGCTTCTGGTAAATTCAAGGAAGAAATTGTTCCAGTTCACACGAAG
Conservation Information
Conserved circRNAs osi_circ_008463
PMCS 0.183136508
Functional Information
Coding potential Y
Potential coding position 16777196-16776904(+)
Potential amino acid sequence MAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMTVNQVRLDGQVNP
KVELFSQARDCLLPMGLTSENVAKRFGITRMEQDQAAVESHRKAAAAAASGKFKEEIVPVHTKC
L*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017