Plant Circular RNA Database

Detail information of Os02g0115600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0115600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_012719
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 819996-821445  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0115600						
					
						Parent gene annotation
						
							S1, RNA binding domain containing protein. (Os02t0115600-01);Nuc
leic acid-binding, OB-fold-like domain containing protein. (Os02
t0115600-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0115600_circ_g.2 Os02g0115600_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0115650-00:3
Os02t0115600-02:4
Os02t0115600-01:4
Os02t0115650-00:3

General Information
CircRNA Name	Os02g0115600_circ_g.1
ID in PlantcircBase	osa_circ_012719
Alias	NA
Organism	Oryza sativa
Position	chr2: 819996-821445 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0115600
Parent gene annotation	S1, RNA binding domain containing protein. (Os02t0115600-01);Nuc leic acid-binding, OB-fold-like domain containing protein. (Os02 t0115600-02)
Parent gene strand	+
Alternative splicing	Os02g0115600_circ_g.2 Os02g0115600_circ_g.3
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0115650-00:3 Os02t0115600-02:4 Os02t0115600-01:4 Os02t0115650-00:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AACATTTCCATCTCAAGTTGATGCTGAGAAGATGAATGCCAGTGAGAATAACATGAATTATGTT
GATGATGGAGGCAATGTGTTATCATCGAAATTAGAGatacttctcaagaaagcagacccagatg
cttcatcgctcgatgtagagaatctaattgccaacaaaaaggccaagttggatgatattttgag
ggagttta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1077
Transcript exons: 819996-820761,820846-820920,820995-821112,821328-821445
ATACTTCTCAAGAAAGCAGACCCAGATGCTTCATCGCTCGATGTAGAGAATCTAATTGCCAACA
AAAAGGCCAAGTTGGATGATATTTTGAGGGAGTTTATGGATGCTAACAGACAGGAACAGACTTC
TGAATCACCAGAGGAAACAAGCAAGCCAATGGTAGACAAAAATTCTCCAAGCATGTCAAGACCT
GTTCAGACCAATGCAAAGCAAGATGAGCCTGCTTTGACTCTGCTGCGACCAGCAGGAAGCAAAT
TGAAGCAAGATGATCCTCCTTTGACTTTGCAGCGACCAGCAGGGAGCAAACCCAAGCAAGATGG
TCCTTCTTTGGCTCCATTACGACCGGTAGGGAGCAAGCCAAAGGAAAATAACACTTCTTTAACC
TTGGTGCGGCCAATGGGAAGCAGACCAATTGTCCGGGGTAAACCGGTGCAAGATAGTTGGCCTA
GCAAGGGGAGCTTAGCTGCCAGAAGAGAGTCGAGCGATGTTGGCAGCACCTCAAGAAAGAACAA
TGTGGATGTTTCCTTGCGGAAACCCACCATACATCAGAGTGATGATGATGAATTGAAGTCGAAG
CTGAATCTGAAACCAAATATTGACTTGAAAATGAGGAAAGATATGGACGAGGATTTGGCCAACA
TCTCTCTTCTTCAAAAGCCAGAGCTTTCAGTAGATAATATGAATTCAAATCAAGAGAAGTCTGA
TGCTGGACCTGCCTCTGTTGCTTCTGGAGAGGATAATGGTGCAGTTGACCCAGAAACAAATGGT
CTTGATGAAAGAGTAGTGATTGACAGTATTAATGATCGTGAGTCATCTGTGCTTCCTGATGATC
TTAGTGCAGAATTACAGCCATCTGAGCAAAATTTTAACCGAGAAGGCGACCCTTCTGTGGTGGA
TGATCAATCAGCCGTCAGCAGTAATTTCTCTATGCAAGCTTTCTTGCAAGGAAAACCTAAGATG
AAAGACTTAGCTGTTGAAACATTTCCATCTCAAGTTGATGCTGAGAAGATGAATGCCAGTGAGA
ATAACATGAATTATGTTGATGATGGAGGCAATGTGTTATCATCGAAATTAGAG
						
					

						Genomic sequence
						
							ATACTTCTCAAGAAAGCAGACCCAGATGCTTCATCGCTCGATGTAGAGAATCTAATTGCCAACA
AAAAGGCCAAGTTGGATGATATTTTGAGGGAGTTTATGGATGCTAACAGACAGGAACAGACTTC
TGAATCACCAGAGGAAACAAGCAAGCCAATGGTAGACAAAAATTCTCCAAGCATGTCAAGACCT
GTTCAGACCAATGCAAAGCAAGATGAGCCTGCTTTGACTCTGCTGCGACCAGCAGGAAGCAAAT
TGAAGCAAGATGATCCTCCTTTGACTTTGCAGCGACCAGCAGGGAGCAAACCCAAGCAAGATGG
TCCTTCTTTGGCTCCATTACGACCGGTAGGGAGCAAGCCAAAGGAAAATAACACTTCTTTAACC
TTGGTGCGGCCAATGGGAAGCAGACCAATTGTCCGGGGTAAACCGGTGCAAGATAGTTGGCCTA
GCAAGGGGAGCTTAGCTGCCAGAAGAGAGTCGAGCGATGTTGGCAGCACCTCAAGAAAGAACAA
TGTGGATGTTTCCTTGCGGAAACCCACCATACATCAGAGTGATGATGATGAATTGAAGTCGAAG
CTGAATCTGAAACCAAATATTGACTTGAAAATGAGGAAAGATATGGACGAGGATTTGGCCAACA
TCTCTCTTCTTCAAAAGCCAGAGCTTTCAGTAGATAATATGAATTCAAATCAAGAGAAGTCTGA
TGCTGGACCTGCCTCTGTTGCTTCTGGAGAGGATAATGGTGCAGTTGACCCAGAAACAAATGGT
AAGGTACAACATCCCAAATGCAACAGGCCATGATGAGCTGGTTCTTTTGGATCTGATGGATTGC
AAATTTTTCAATCTTCAGGTCTTGATGAAAGAGTAGTGATTGACAGTATTAATGATCGTGAGTC
ATCTGTGCTTCCTGATGATCTTAGTGCAGGTAAGGAAGGCATAATAGATCAGTGACTAGTCTCT
ATTCATCCATCATACTAATGTTATGTTAAAATTTTCAAGAATTACAGCCATCTGAGCAAAATTT
TAACCGAGAAGGCGACCCTTCTGTGGTGGATGATCAATCAGCCGTCAGCAGTAATTTCTCTATG
CAAGCTTTCTTGCAAGGAAAACCTAAGATGTACTTTCTGATGAAACTATGCACTTCTATTTTTA
GCATAACATTTTCATCGCTTGTAAAATATATATTTGACATTTCTGCTTAACTAATTGTACTTCA
TGTTGTTACATTGATCCAAATTGGGTGTATCCCTTCTTCTTTTGAGTAACTCACGTCATTACAG
TTTCTCGCATGTTGGCCGAGCTACCACTAATATGGCAATTACTACATTGTAGGAAAGACTTAGC
TGTTGAAACATTTCCATCTCAAGTTGATGCTGAGAAGATGAATGCCAGTGAGAATAACATGAAT
TATGTTGATGATGGAGGCAATGTGTTATCATCGAAATTAGAG
						
					

			
		

Sequences
Splice junction sequence	AACATTTCCATCTCAAGTTGATGCTGAGAAGATGAATGCCAGTGAGAATAACATGAATTATGTT GATGATGGAGGCAATGTGTTATCATCGAAATTAGAGatacttctcaagaaagcagacccagatg cttcatcgctcgatgtagagaatctaattgccaacaaaaaggccaagttggatgatattttgag ggagttta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1077 Transcript exons: 819996-820761,820846-820920,820995-821112,821328-821445 ATACTTCTCAAGAAAGCAGACCCAGATGCTTCATCGCTCGATGTAGAGAATCTAATTGCCAACA AAAAGGCCAAGTTGGATGATATTTTGAGGGAGTTTATGGATGCTAACAGACAGGAACAGACTTC TGAATCACCAGAGGAAACAAGCAAGCCAATGGTAGACAAAAATTCTCCAAGCATGTCAAGACCT GTTCAGACCAATGCAAAGCAAGATGAGCCTGCTTTGACTCTGCTGCGACCAGCAGGAAGCAAAT TGAAGCAAGATGATCCTCCTTTGACTTTGCAGCGACCAGCAGGGAGCAAACCCAAGCAAGATGG TCCTTCTTTGGCTCCATTACGACCGGTAGGGAGCAAGCCAAAGGAAAATAACACTTCTTTAACC TTGGTGCGGCCAATGGGAAGCAGACCAATTGTCCGGGGTAAACCGGTGCAAGATAGTTGGCCTA GCAAGGGGAGCTTAGCTGCCAGAAGAGAGTCGAGCGATGTTGGCAGCACCTCAAGAAAGAACAA TGTGGATGTTTCCTTGCGGAAACCCACCATACATCAGAGTGATGATGATGAATTGAAGTCGAAG CTGAATCTGAAACCAAATATTGACTTGAAAATGAGGAAAGATATGGACGAGGATTTGGCCAACA TCTCTCTTCTTCAAAAGCCAGAGCTTTCAGTAGATAATATGAATTCAAATCAAGAGAAGTCTGA TGCTGGACCTGCCTCTGTTGCTTCTGGAGAGGATAATGGTGCAGTTGACCCAGAAACAAATGGT CTTGATGAAAGAGTAGTGATTGACAGTATTAATGATCGTGAGTCATCTGTGCTTCCTGATGATC TTAGTGCAGAATTACAGCCATCTGAGCAAAATTTTAACCGAGAAGGCGACCCTTCTGTGGTGGA TGATCAATCAGCCGTCAGCAGTAATTTCTCTATGCAAGCTTTCTTGCAAGGAAAACCTAAGATG AAAGACTTAGCTGTTGAAACATTTCCATCTCAAGTTGATGCTGAGAAGATGAATGCCAGTGAGA ATAACATGAATTATGTTGATGATGGAGGCAATGTGTTATCATCGAAATTAGAG
Genomic sequence	ATACTTCTCAAGAAAGCAGACCCAGATGCTTCATCGCTCGATGTAGAGAATCTAATTGCCAACA AAAAGGCCAAGTTGGATGATATTTTGAGGGAGTTTATGGATGCTAACAGACAGGAACAGACTTC TGAATCACCAGAGGAAACAAGCAAGCCAATGGTAGACAAAAATTCTCCAAGCATGTCAAGACCT GTTCAGACCAATGCAAAGCAAGATGAGCCTGCTTTGACTCTGCTGCGACCAGCAGGAAGCAAAT TGAAGCAAGATGATCCTCCTTTGACTTTGCAGCGACCAGCAGGGAGCAAACCCAAGCAAGATGG TCCTTCTTTGGCTCCATTACGACCGGTAGGGAGCAAGCCAAAGGAAAATAACACTTCTTTAACC TTGGTGCGGCCAATGGGAAGCAGACCAATTGTCCGGGGTAAACCGGTGCAAGATAGTTGGCCTA GCAAGGGGAGCTTAGCTGCCAGAAGAGAGTCGAGCGATGTTGGCAGCACCTCAAGAAAGAACAA TGTGGATGTTTCCTTGCGGAAACCCACCATACATCAGAGTGATGATGATGAATTGAAGTCGAAG CTGAATCTGAAACCAAATATTGACTTGAAAATGAGGAAAGATATGGACGAGGATTTGGCCAACA TCTCTCTTCTTCAAAAGCCAGAGCTTTCAGTAGATAATATGAATTCAAATCAAGAGAAGTCTGA TGCTGGACCTGCCTCTGTTGCTTCTGGAGAGGATAATGGTGCAGTTGACCCAGAAACAAATGGT AAGGTACAACATCCCAAATGCAACAGGCCATGATGAGCTGGTTCTTTTGGATCTGATGGATTGC AAATTTTTCAATCTTCAGGTCTTGATGAAAGAGTAGTGATTGACAGTATTAATGATCGTGAGTC ATCTGTGCTTCCTGATGATCTTAGTGCAGGTAAGGAAGGCATAATAGATCAGTGACTAGTCTCT ATTCATCCATCATACTAATGTTATGTTAAAATTTTCAAGAATTACAGCCATCTGAGCAAAATTT TAACCGAGAAGGCGACCCTTCTGTGGTGGATGATCAATCAGCCGTCAGCAGTAATTTCTCTATG CAAGCTTTCTTGCAAGGAAAACCTAAGATGTACTTTCTGATGAAACTATGCACTTCTATTTTTA GCATAACATTTTCATCGCTTGTAAAATATATATTTGACATTTCTGCTTAACTAATTGTACTTCA TGTTGTTACATTGATCCAAATTGGGTGTATCCCTTCTTCTTTTGAGTAACTCACGTCATTACAG TTTCTCGCATGTTGGCCGAGCTACCACTAATATGGCAATTACTACATTGTAGGAAAGACTTAGC TGTTGAAACATTTCCATCTCAAGTTGATGCTGAGAAGATGAATGCCAGTGAGAATAACATGAAT TATGTTGATGATGGAGGCAATGTGTTATCATCGAAATTAGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.232607374

Conservation Information
Conserved circRNAs	NA
PMCS	0.232607374

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							820096-821442(+)
820179-821405(-)
						
					

						Potential amino acid sequence
						
							MDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPAGSKLKQDDPPLTLQR
PAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDSWPSKGSLAARRESS
DVGSTSRKNNVDVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDLANISLLQKPELSVD
NMNSNQEKSDAGPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVLPDDLSAELQPSEQNF
NREGDPSVVDDQSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMNASENNMNYVDDGGNV
LSSKLEILLKKADPDASSLDVENLIANKKAKLDDILREFMDANRQEQTSESPEETSKPMVDKNS
PSMSRPVQTNAKQDEPALTLLRPAGSKLKQDDPPLTLQRPAGSKPKQDGPSLAPLRPVGSKPKE
NNTSLTLVRPMGSRPIVRGKPVQDSWPSKGSLAARRESSDVGSTSRKNNVDVSLRKPTIHQSDD
DELKSKLNLKPNIDLKMRKDMDEDLANISLLQKPELSVDNMNSNQEKSDAGPASVASGEDNGAV
DPETNGLDERVVIDSINDRESSVLPDDLSAELQPSEQNFNREGDPSVVDDQSAVSSNFSMQAFL
QGKPKMKDLAVETFPSQVDAEKMNASENNMNYVDDGGNVLSSKLEILLKKADPDASSLDVENLI
ANKKAKLDDILREFMDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPAG
SKLKQDDPPLTLQRPAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDS
WPSKGSLAARRESSDVGSTSRKNNVDVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDL
ANISLLQKPELSVDNMNSNQEKSDAGPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVLP
DDLSAELQPSEQNFNREGDPSVVDDQSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMNA
SENNMNYVDDGGNVLSSKLEILLKKADPDASSLDVENLIANKKAKLDDILREFMDANRQEQTSE
SPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPAGSKLKQDDPPLTLQRPAGSKPKQDGP
SLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDSWPSKGSLAARRESSDVGSTSRKNNV
DVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDLANISLLQKPELSVDNMNSNQEKSDA
GPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVLPDDLSAELQPSEQNFNREGDPSVVDD
QSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMNASENNMNYVDDGGNVLSSKLE(+)
MLGEFLSTIGLLVSSGDSEVCSCLLASINSLKISSNLAFLLAIRFSTSSDEASGSAFLRSISNF
DDNTLPPSST*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	820096-821442(+) 820179-821405(-)
Potential amino acid sequence	MDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPAGSKLKQDDPPLTLQR PAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDSWPSKGSLAARRESS DVGSTSRKNNVDVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDLANISLLQKPELSVD NMNSNQEKSDAGPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVLPDDLSAELQPSEQNF NREGDPSVVDDQSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMNASENNMNYVDDGGNV LSSKLEILLKKADPDASSLDVENLIANKKAKLDDILREFMDANRQEQTSESPEETSKPMVDKNS PSMSRPVQTNAKQDEPALTLLRPAGSKLKQDDPPLTLQRPAGSKPKQDGPSLAPLRPVGSKPKE NNTSLTLVRPMGSRPIVRGKPVQDSWPSKGSLAARRESSDVGSTSRKNNVDVSLRKPTIHQSDD DELKSKLNLKPNIDLKMRKDMDEDLANISLLQKPELSVDNMNSNQEKSDAGPASVASGEDNGAV DPETNGLDERVVIDSINDRESSVLPDDLSAELQPSEQNFNREGDPSVVDDQSAVSSNFSMQAFL QGKPKMKDLAVETFPSQVDAEKMNASENNMNYVDDGGNVLSSKLEILLKKADPDASSLDVENLI ANKKAKLDDILREFMDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPAG SKLKQDDPPLTLQRPAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDS WPSKGSLAARRESSDVGSTSRKNNVDVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDL ANISLLQKPELSVDNMNSNQEKSDAGPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVLP DDLSAELQPSEQNFNREGDPSVVDDQSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMNA SENNMNYVDDGGNVLSSKLEILLKKADPDASSLDVENLIANKKAKLDDILREFMDANRQEQTSE SPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPAGSKLKQDDPPLTLQRPAGSKPKQDGP SLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDSWPSKGSLAARRESSDVGSTSRKNNV DVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDLANISLLQKPELSVDNMNSNQEKSDA GPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVLPDDLSAELQPSEQNFNREGDPSVVDD QSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMNASENNMNYVDDGGNVLSSKLE(+) MLGEFLSTIGLLVSSGDSEVCSCLLASINSLKISSNLAFLLAIRFSTSSDEASGSAFLRSISNF DDNTLPPSST*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0115600_circ_g.1

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