circRNA
Detailed infomation of each circRNA
Detail information of Os02g0115600_circ_g.2
| General Information | |
|---|---|
| CircRNA Name | Os02g0115600_circ_g.2 |
| ID in PlantcircBase | osa_circ_012720 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr2: 819996-822666 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os02g0115600 |
| Parent gene annotation |
S1, RNA binding domain containing protein. (Os02t0115600-01);Nuc leic acid-binding, OB-fold-like domain containing protein. (Os02 t0115600-02) |
| Parent gene strand | + |
| Alternative splicing | Os02g0115600_circ_g.1 Os02g0115600_circ_g.3 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os02t0115650-00:8 Os02t0115600-01:9 Os02t0115600-02:9 Os02t0115650-00:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.236645114 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
820096-822663(+) 822627-820038(+) 820179-822665(-) |
| Potential amino acid sequence |
MDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPAGSKLKQDDPPLTLQR PAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDSWPSKGSLAARRESS DVGSTSRKNNVDVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDLANISLLQKPELSVD NMNSNQEKSDAGPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVLPDDLSAELQPSEQNF NREGDPSVVDDQSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMNASENNMNYVDDGGNV LSSKLEDITESDWTRLENYASTGEKVEVELINCSSKGFVVSLDSLIGFLPYRNLATKWKFLAFE TWLRQKGGDPSLFKQSVGIEESFEVNDRNIESVSSSDSELAVQDQGSMPSKEKFEDLLRTYNTE KSKFLSSFIGQRLRVSVVLADRKSKKIFFSMKPKESEELIQKKKSLMAKLNVGDIVECTIKRFV YFGIFVEVEGVPALIQQWEVSWDETLDPSVSYKIGQILLKKADPDASSLDVENLIANKKAKLDD ILREFMDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPAGSKLKQDDPP LTLQRPAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDSWPSKGSLAA RRESSDVGSTSRKNNVDVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDLANISLLQKP ELSVDNMNSNQEKSDAGPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVLPDDLSAELQP SEQNFNREGDPSVVDDQSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMNASENNMNYVD DGGNVLSSKLEDITESDWTRLENYASTGEKVEVELINCSSKGFVVSLDSLIGFLPYRNLATKWK FLAFETWLRQKGGDPSLFKQSVGIEESFEVNDRNIESVSSSDSELAVQDQGSMPSKEKFEDLLR TYNTEKSKFLSSFIGQRLRVSVVLADRKSKKIFFSMKPKESEELIQKKKSLMAKLNVGDIVECT IKRFVYFGIFVEVEGVPALIQQWEVSWDETLDPSVSYKIGQILLKKADPDASSLDVENLIANKK AKLDDILREFMDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPAGSKLK QDDPPLTLQRPAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDSWPSK GSLAARRESSDVGSTSRKNNVDVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDEDLANIS LLQKPELSVDNMNSNQEKSDAGPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVLPDDLS AELQPSEQNFNREGDPSVVDDQSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMNASENN MNYVDDGGNVLSSKLEDITESDWTRLENYASTGEKVEVELINCSSKGFVVSLDSLIGFLPYRNL ATKWKFLAFETWLRQKGGDPSLFKQSVGIEESFEVNDRNIESVSSSDSELAVQDQGSMPSKEKF EDLLRTYNTEKSKFLSSFIGQRLRVSVVLADRKSKKIFFSMKPKESEELIQKKKSLMAKLNVGD IVECTIKRFVYFGIFVEVEGVPALIQQWEVSWDETLDPSVSYKIGQILLKKADPDASSLDVENL IANKKAKLDDILREFMDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPA GSKLKQDDPPLTLQRPAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQD SWPSKGSLAARRESSDVGSTSRKNNVDVSLRKPTIHQSDDDELKSKLNLKPNIDLKMRKDMDED LANISLLQKPELSVDNMNSNQEKSDAGPASVASGEDNGAVDPETNGLDERVVIDSINDRESSVL PDDLSAELQPSEQNFNREGDPSVVDDQSAVSSNFSMQAFLQGKPKMKDLAVETFPSQVDAEKMN ASENNMNYVDDGGNVLSSKLEDITESDWTRLENYASTGEKVEVELINCSSKGFVVSLDSLIGFL PYRNLATKWKFLAFETWLRQKGGDPSLFKQSVGIEESFEVNDRNIESVSSSDSELAVQDQGSMP SKEKFEDLLRTYNTEKSKFLSSFIGQRLRVSVVLADRKSKKIFFSMKPKESEELIQKKKSLMAK LNVGDIVECTIKRFVYFGIFVEVEGVPALIQQWEVSWDETLDPSVSYKIGQ(+) MKPWTHQFLTKLVRYFSRKQTQMLHRSM*(+) MLGEFLSTIGLLVSSGDSEVCSCLLASINSLKISSNLAFLLAIRFSTSSDEASGSAFLRSI*(- ) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |
