Detail information of GLYMA_05G214100_circ_ag.2


General Information
CircRNA Name GLYMA_05G214100_circ_ag.2
ID in PlantcircBase gma_circ_008255
Alias circRNA1094
Organism Glycine max
Position chr5: 39525346-39530184  JBrowse»
Reference genome v2.0.38
Type   ag-circRNA
Identification method CIRI, CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing GLYMA_05G213800_circ_ag.1 GLYMA_05G213800_circ_ag.2 GLYMA_05G213800_circ_ag.3 GLYMA_05G213800_circ_ag.4 GLYMA_05G214100_circ_ag.1 GLYMA_05G214100_circ_ag.3 GLYMA_05G214100_circ_ag.4
Support reads NA
Tissues pod
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTGGAAGCTTTTTACGGAACACTACATCAAGTCGTGCATCAAGAGTATTTTCGCACACAATC
TTTCCATCACGAGAAGCCAACACCACCCCACCAGAGcagtagagatcatgagaattgtgatgag
tgggtccaggtggaagatagacttggttgtcaacaatgatctctgggggatcaacatttgcttt
ctcagcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTAGAGATCATGAGAATTGTGATGAGTGGGTCCAGGTGGAAGATAGACTTGGTTGTCAACAA
TGATCTCTGGGGGATCAACATTTGCTTTCTCAGCATACTCCTGGGCAGCTGAATCCAGCTCATG
CTCTACCAAATGCAGGTCATCTTTCCGACATCTCAATAAGACAGAAGGTTCTTTCAGTCTAAGC
AAACACTGTAACACACAGCCCTTACGTTATATCCCAAGTCCACATTCTTACTAGTAGAAGGTAG
TCCATAAAATAATATCAGAATATAGCATTACAAAGGTTTCAAAAAGGTCATGTAGACCAGGGAA
AGAGGGAAGGGGCAGGGGTTGAACCAATGGCATTGAACACACCATTGTAAAGACCAAGGTTGGT
TCCCATGGCAGCAAATAGTTATGATTCAAAACAATAAATGATATTGATTCATTAATGTTGCCAG
GTAATAGAAATTTGCAATGAAAATAGTTATAGATACAATGCCATGCCATCATCACAAATAATAC
AAAAGTAGGACAAAATGGAAACAACAATACTTGGCAGAAGAGCAAAATCAAATTATGAAACCAT
AAGTAGGTGTACCATATTCAAATTTAACTGACCTGAACAATGAGATCTTTCAGCAGGTTTCTGT
ACTCATGATGATGATGACTCAGTAGATTCAAATGATGATGATGACTCACATTCAACAGTTCCTT
GGATGCAGCTTCTTTCATGGAACTGATCACGTCATCTTGAGCTTGAAGAACTTTGATCCGAGAA
GCATTCAGCTGCATCGAGTACTCACTGCAACAAACAATTAATTGTGCCACAAAAATTAAACTAT
CTCAAATGGCACTGTTTTTGCCACTTTAGAGCACAGCACAACACTCCATACTTCACATGATGAA
ATAAAACAAGCCTCAGAAACTAAACTCTCAATTTAAAAGATGAGAGAATCTTTCATTCATCAAA
CTTCAACAATATCCTTGACTTCAAGTAATTTGCCACAGATCTCAACAGCTTGAAAGAAATTGAA
CATCAAACCAAACAAAATAAATAAATAAATAAATAAAAGAGACTAAACTAAACCTCAACCCATA
TTTTCAAAATGCAAAAAGTTCAAAGTGGAGCAAATATTAATTACTGATTTTACTGAATAGTAAA
ACAAGACCACAAGGATCCGCTAGACTACTTCATTAGTGATCTGGATTGCCTGCATTCACGCATT
CAGCAATTCAGAACCGTTCAACCAAGTCGGACAAATCATATTTTAATACTTAAAGCACAATTTT
AAAATCTCAGCAGTTTGATCTTCATCACAGCCATTAGACAATGCAGTAAGGATCAAGACCTGTA
CAAGTAGGATTCACTCTCCAGAATTTAATTTCAACTGATATCAACGGACGAGAAGACCTAACTA
ATTTCGAACTCACAAGAAACAAAAAAACAAAGGAGTATAGAGAGTTATGTAGGAAGTTACATCT
TCTTGCGAATTTCGACTTGGCGCTCTTTGCGTTCGTATTCTTGCCTGATCTTCTTCTTGTCGGC
TTCGACCAACTGCAGCTTCTCGATATTGAATTCCTGCAGAAGGAAAAGTACGATTCCGTTTAAG
AGCATGAATTTGAAACGAAAGAGGAGGAAATGGCGAAATGAAGAAACCTCTTCGGCGGAGACAG
AGATCTCGTTGGCCTTTTCCTCAGCTTCCTGGCGGATGAACCGCACCATCTGCTGGATTTGCTT
CGAGACATCTGCGTCGTTCATTTTCGGAGACCGGAAACTTCCTCAATGATAGAACTTGTTACGT
ATTGCTGCGCTGCCCCAATATCACAGCCCAGGCCAGCTCACCTCTTTTTTATGCATGTTCAACA
AGGTGACAATTTATGCTGCACATCTTGGTTCTCGCGTGGAAAATTCGTTTATATTTAATTTCTT
TCCTAACATTTTTTTTATGTGTGCATTAAAAATACCAATTTAATTTTTATGATATTATTATTTA
TGATTTTTAAAATAGCTATACAAAAATAAATTCAATATATGCGATATGATGATTTTTTATTGAA
TAATAATATAAATATCTATTGTACTTTTTTTTTTATAAAGGTTATGTTAATAAAAACTGATTAA
AAAAACTACTCAGTCAAAAGTGTTTAAATTATCTTATTAAATCATAATTTTTTGATAAAATTAT
TTATTGAAATAGTTGAAAGATGTAAAAGAAAAGAAATGAACATATTTATATAAGGTTTTATATA
CATTTTAATTTCATTTTATGAATAAATTTATATATTTTGGGGTATTAGAATTTTAATTTTTTAA
AATAATCTAATAATAAAATTATTTAAAAAATAATAAAATGAATATAATATTTATTTTTATCAAT
TTCATGAAGTATAGTGTTGAAATAATATTGTACTATTTATAATATTTATATTGATCTATAAAAT
AAATATTATAAATACTTCAATGGTTAAAATAAATTGTAAGATAAAAAATGTGTATAAGGAATGA
GCGAAAATAAATAAATGAATAAATAATCCCTGTTTTATTTTATTTTTTTAAAAATCAAAGCTGC
AATGAGCCGGAGCAAACACTTATTGTCAATGAGATAAAAGTCATCACGAAAGAAAACTTAGAAC
GATGCATCCCCCATCATACACGACATGGGAACAAATGGACTACCGAAATATGGTGTTATTTAAA
AGACAATAATTATAAGTACACAGAAGCAATGGCAGGGCAGCTTTTCAGGTCAAAGACAAGCTAA
TGATGCTTCGGGATATAAACATTTCAGGGGTAACCAAACCATACAATCAAAATCTTCAAACAAC
AACTTGTCCAAAGAGCTGCTTTCGGATCTGCAATAAGGAGCAAGAAACTTGATAAGAATGTAGT
CGTTAGACATGGTTAACCATACAACATCCAAAGTCAAAGTTGGCCAGTCATGAATTAATGGGAA
TACAGTACATTTTGTTTGGAGGAAAAAGAATTGTGAAAAAAATTAGTGAAAAGGATCTCTCGGG
CCAGTCTAGCAAATACAAAGGCACAGAAATAAAAGGGGAAAAATTAGACTTATTAGTTTTAAAA
TCAAATCAAATGTCATTTTTAGTTGGTTATATTTTCAATGCAATCAATAGAAAGTGTATATAAT
ATTGCAGAATGAAACCAAGAAAATAAATAGTGCATGTTTGTTTCCCCGTTAAAACCTTGGCTGC
ACGAATTCCGATGCATCTAAACGACCGTTTGTGCATTCCGAGACACCAGAAGCAGAAGTAACTC
CTTTGTTACTTTTGAAAGAACGCCAGTTAGTAACTGGTTCCCAAACACAGCCGTTTGAGAAAGG
GAAGTAAATCATAAATGCTATATATACCTTATTTGAGTGACAGCAATACATCCAAGTTCACAGA
GTTTTAATTGAAGAAGTTTGGCAACCCTTAATCCAACATTCCCTTCCTGGCTCTCTCCTTCCCC
TTAACATAATAATTACTGTCAATTCTTAATTTATATCAAAGTTATTGTTACAATATATATTCTA
ATCTATTATCTCTATCCATTGACAAATGTATTCATTTTTTTTAACTACTTATCTCAAAATTTTC
TTTTGAGTACCCAATATTCTAATTAGCTCCATTCTCTCTTGCCTTCCGCCTTACTTTGGGTCTC
CTTTGTATTTCTAACTTACTATTTTTTAATATTAATTTGTTATTATCTTCCTTTAGTTCATGTC
AGTCTTTTGTTTCATTTTCATATTCCTTCGAAGGAAAGTGAATATTTGAAGAGGTCCAGTGAGT
CGTAAAAGTGTTCAAGTCTTGAAGACTGAAGAGGTTTACCAAATTTTGTAGTAGATATTGATAG
TCTTGACATATTTTTAGAATTGAAAATATTGAAAGAAATATTAACAAAAGGCAATTAATGTCTT
ACAGAACTTAGAAGTATTAAATCATTACTTATAAAATATCATTGATATACTGTAATTGTTTACA
ACTATTCAATGAAGTTTTTCAAAACTAAAACTAGTTAAATCCTATTTTAGACCAATGATGTTAT
TAGTTGTATTAAATGAGTTATATATTATCTTAGAATTACTTCATTATAAATTTTTGATAAATAA
TTATGCAGCTTAGAAATTTTGAAGAATTAAATGAGAATTGATAGGTTATATCGTATCAAACATA
AATGTCATAAAGCCCCAGAATTTCTGAACCTTGCATCCTTTCATACATAAATTCATTGCAGTTA
ATTGTTCTAGTTGTCCATCAGTGTGTATCATTCACCTGAATTATTTTATTTCAATGTCAGTATC
TGATGGGAATCAGCCCAATAGGTTTGGCAAGTTTTATACTTGTAGGCCCAAGAGGGTAATATCT
AACCAGTAGTGAACTTTTGAGAGGATAATAAGTTAGTCAGAGGAGAGAGGGTAGTGGTAAGGGG
AATTACGGTTATATGTAAGGGAGTCATGATTGAAATAGGGGTTATGGATGATTATGAATGAGAA
TTGGAGTCTAGAGAATCTTTTCTGACTTGGGGGAGCATTGCTCTCATCATTTTCGCGTCCCTTC
TCTGTTTTATTTTCTCTTGTTTCCTATTTCTCATCTGACCTCTGATACAGAACGTATCAGTGCC
AAAGTTTCAATATCTCGAAAATAACAACATTTTTACTTGGAAAAAATATGAAAGTCACAATACA
AACAATTGGACAGCAAATATGGATACAAGTCACAGAATAAGACAACTGCTATGAACAAAAAACT
TACCTCTGGAAGCTTTTTACGGAACACTACATCAAGTCGTGCATCAAGAGTATTTTCGCACACA
ATCTTTCCATCACGAGAAGCCAACACCACCCCACCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.630156127
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs gma-miR5031
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021a