Detail information of GLYMA_05G214100_circ_ag.3


General Information
CircRNA Name GLYMA_05G214100_circ_ag.3
ID in PlantcircBase gma_circ_008256
Alias circRNA190
Organism Glycine max
Position chr5: 39525954-39530658  JBrowse»
Reference genome v2.0.38
Type   ag-circRNA
Identification method CIRI, CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing GLYMA_05G213800_circ_ag.1 GLYMA_05G213800_circ_ag.2 GLYMA_05G213800_circ_ag.3 GLYMA_05G213800_circ_ag.4 GLYMA_05G214100_circ_ag.1 GLYMA_05G214100_circ_ag.2 GLYMA_05G214100_circ_ag.4
Support reads NA
Tissues pod
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATACTCCTGTGCAGATGAATCCAGCACATGCTCTACCAAGTGCAGGTCATCTTTCCGACATCT
CAATAGGACTGAAGGTTCTTTCAGTCTAAGCAAACActgaacaatgagatctttcagcaggttt
ctgtactcatgatgatgatgactcagtagattcaaatgatgatgatgactcacattcaacagtt
ccttggat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAACAATGAGATCTTTCAGCAGGTTTCTGTACTCATGATGATGATGACTCAGTAGATTCAAA
TGATGATGATGACTCACATTCAACAGTTCCTTGGATGCAGCTTCTTTCATGGAACTGATCACGT
CATCTTGAGCTTGAAGAACTTTGATCCGAGAAGCATTCAGCTGCATCGAGTACTCACTGCAACA
AACAATTAATTGTGCCACAAAAATTAAACTATCTCAAATGGCACTGTTTTTGCCACTTTAGAGC
ACAGCACAACACTCCATACTTCACATGATGAAATAAAACAAGCCTCAGAAACTAAACTCTCAAT
TTAAAAGATGAGAGAATCTTTCATTCATCAAACTTCAACAATATCCTTGACTTCAAGTAATTTG
CCACAGATCTCAACAGCTTGAAAGAAATTGAACATCAAACCAAACAAAATAAATAAATAAATAA
ATAAAAGAGACTAAACTAAACCTCAACCCATATTTTCAAAATGCAAAAAGTTCAAAGTGGAGCA
AATATTAATTACTGATTTTACTGAATAGTAAAACAAGACCACAAGGATCCGCTAGACTACTTCA
TTAGTGATCTGGATTGCCTGCATTCACGCATTCAGCAATTCAGAACCGTTCAACCAAGTCGGAC
AAATCATATTTTAATACTTAAAGCACAATTTTAAAATCTCAGCAGTTTGATCTTCATCACAGCC
ATTAGACAATGCAGTAAGGATCAAGACCTGTACAAGTAGGATTCACTCTCCAGAATTTAATTTC
AACTGATATCAACGGACGAGAAGACCTAACTAATTTCGAACTCACAAGAAACAAAAAAACAAAG
GAGTATAGAGAGTTATGTAGGAAGTTACATCTTCTTGCGAATTTCGACTTGGCGCTCTTTGCGT
TCGTATTCTTGCCTGATCTTCTTCTTGTCGGCTTCGACCAACTGCAGCTTCTCGATATTGAATT
CCTGCAGAAGGAAAAGTACGATTCCGTTTAAGAGCATGAATTTGAAACGAAAGAGGAGGAAATG
GCGAAATGAAGAAACCTCTTCGGCGGAGACAGAGATCTCGTTGGCCTTTTCCTCAGCTTCCTGG
CGGATGAACCGCACCATCTGCTGGATTTGCTTCGAGACATCTGCGTCGTTCATTTTCGGAGACC
GGAAACTTCCTCAATGATAGAACTTGTTACGTATTGCTGCGCTGCCCCAATATCACAGCCCAGG
CCAGCTCACCTCTTTTTTATGCATGTTCAACAAGGTGACAATTTATGCTGCACATCTTGGTTCT
CGCGTGGAAAATTCGTTTATATTTAATTTCTTTCCTAACATTTTTTTTATGTGTGCATTAAAAA
TACCAATTTAATTTTTATGATATTATTATTTATGATTTTTAAAATAGCTATACAAAAATAAATT
CAATATATGCGATATGATGATTTTTTATTGAATAATAATATAAATATCTATTGTACTTTTTTTT
TTATAAAGGTTATGTTAATAAAAACTGATTAAAAAAACTACTCAGTCAAAAGTGTTTAAATTAT
CTTATTAAATCATAATTTTTTGATAAAATTATTTATTGAAATAGTTGAAAGATGTAAAAGAAAA
GAAATGAACATATTTATATAAGGTTTTATATACATTTTAATTTCATTTTATGAATAAATTTATA
TATTTTGGGGTATTAGAATTTTAATTTTTTAAAATAATCTAATAATAAAATTATTTAAAAAATA
ATAAAATGAATATAATATTTATTTTTATCAATTTCATGAAGTATAGTGTTGAAATAATATTGTA
CTATTTATAATATTTATATTGATCTATAAAATAAATATTATAAATACTTCAATGGTTAAAATAA
ATTGTAAGATAAAAAATGTGTATAAGGAATGAGCGAAAATAAATAAATGAATAAATAATCCCTG
TTTTATTTTATTTTTTTAAAAATCAAAGCTGCAATGAGCCGGAGCAAACACTTATTGTCAATGA
GATAAAAGTCATCACGAAAGAAAACTTAGAACGATGCATCCCCCATCATACACGACATGGGAAC
AAATGGACTACCGAAATATGGTGTTATTTAAAAGACAATAATTATAAGTACACAGAAGCAATGG
CAGGGCAGCTTTTCAGGTCAAAGACAAGCTAATGATGCTTCGGGATATAAACATTTCAGGGGTA
ACCAAACCATACAATCAAAATCTTCAAACAACAACTTGTCCAAAGAGCTGCTTTCGGATCTGCA
ATAAGGAGCAAGAAACTTGATAAGAATGTAGTCGTTAGACATGGTTAACCATACAACATCCAAA
GTCAAAGTTGGCCAGTCATGAATTAATGGGAATACAGTACATTTTGTTTGGAGGAAAAAGAATT
GTGAAAAAAATTAGTGAAAAGGATCTCTCGGGCCAGTCTAGCAAATACAAAGGCACAGAAATAA
AAGGGGAAAAATTAGACTTATTAGTTTTAAAATCAAATCAAATGTCATTTTTAGTTGGTTATAT
TTTCAATGCAATCAATAGAAAGTGTATATAATATTGCAGAATGAAACCAAGAAAATAAATAGTG
CATGTTTGTTTCCCCGTTAAAACCTTGGCTGCACGAATTCCGATGCATCTAAACGACCGTTTGT
GCATTCCGAGACACCAGAAGCAGAAGTAACTCCTTTGTTACTTTTGAAAGAACGCCAGTTAGTA
ACTGGTTCCCAAACACAGCCGTTTGAGAAAGGGAAGTAAATCATAAATGCTATATATACCTTAT
TTGAGTGACAGCAATACATCCAAGTTCACAGAGTTTTAATTGAAGAAGTTTGGCAACCCTTAAT
CCAACATTCCCTTCCTGGCTCTCTCCTTCCCCTTAACATAATAATTACTGTCAATTCTTAATTT
ATATCAAAGTTATTGTTACAATATATATTCTAATCTATTATCTCTATCCATTGACAAATGTATT
CATTTTTTTTAACTACTTATCTCAAAATTTTCTTTTGAGTACCCAATATTCTAATTAGCTCCAT
TCTCTCTTGCCTTCCGCCTTACTTTGGGTCTCCTTTGTATTTCTAACTTACTATTTTTTAATAT
TAATTTGTTATTATCTTCCTTTAGTTCATGTCAGTCTTTTGTTTCATTTTCATATTCCTTCGAA
GGAAAGTGAATATTTGAAGAGGTCCAGTGAGTCGTAAAAGTGTTCAAGTCTTGAAGACTGAAGA
GGTTTACCAAATTTTGTAGTAGATATTGATAGTCTTGACATATTTTTAGAATTGAAAATATTGA
AAGAAATATTAACAAAAGGCAATTAATGTCTTACAGAACTTAGAAGTATTAAATCATTACTTAT
AAAATATCATTGATATACTGTAATTGTTTACAACTATTCAATGAAGTTTTTCAAAACTAAAACT
AGTTAAATCCTATTTTAGACCAATGATGTTATTAGTTGTATTAAATGAGTTATATATTATCTTA
GAATTACTTCATTATAAATTTTTGATAAATAATTATGCAGCTTAGAAATTTTGAAGAATTAAAT
GAGAATTGATAGGTTATATCGTATCAAACATAAATGTCATAAAGCCCCAGAATTTCTGAACCTT
GCATCCTTTCATACATAAATTCATTGCAGTTAATTGTTCTAGTTGTCCATCAGTGTGTATCATT
CACCTGAATTATTTTATTTCAATGTCAGTATCTGATGGGAATCAGCCCAATAGGTTTGGCAAGT
TTTATACTTGTAGGCCCAAGAGGGTAATATCTAACCAGTAGTGAACTTTTGAGAGGATAATAAG
TTAGTCAGAGGAGAGAGGGTAGTGGTAAGGGGAATTACGGTTATATGTAAGGGAGTCATGATTG
AAATAGGGGTTATGGATGATTATGAATGAGAATTGGAGTCTAGAGAATCTTTTCTGACTTGGGG
GAGCATTGCTCTCATCATTTTCGCGTCCCTTCTCTGTTTTATTTTCTCTTGTTTCCTATTTCTC
ATCTGACCTCTGATACAGAACGTATCAGTGCCAAAGTTTCAATATCTCGAAAATAACAACATTT
TTACTTGGAAAAAATATGAAAGTCACAATACAAACAATTGGACAGCAAATATGGATACAAGTCA
CAGAATAAGACAACTGCTATGAACAAAAAACTTACCTCTGGAAGCTTTTTACGGAACACTACAT
CAAGTCGTGCATCAAGAGTATTTTCGCACACAATCTTTCCATCACGAGAAGCCAACACCACCCC
ACCAGAGCTGAATATCAATTAAAATAATCAGTTGTGCTACAACTGAAATTTAAATATAAAAAAA
AAAGCTAATATGATTTTAGGAAGTATCTTCAATCAACTACAAACACTATAAACAAATAAATCTT
AAGATTTGAAATTAATGCTTTTACACCAGAAGATAATGTTAAATTACAACGAATCAAGAGAAAA
AAGGTAAAGCATGGGTTAAGAAAGCAAGGCCCTGATTGGCATTTGGCAGGGACAGACATTTAGT
TAAGATTTGATTATAACATGAACATTACCAGTAGAGATCATGAGAATTGTGATGACTGGGTCCA
GGTGGAAGATAAACTTGGTTGTCAACAATGATCTCTGGGGGATCAACATTTGCTTTCTCAGCAT
ACTCCTGTGCAGATGAATCCAGCACATGCTCTACCAAGTGCAGGTCATCTTTCCGACATCTCAA
TAGGACTGAAGGTTCTTTCAGTCTAAGCAAACA
Conservation Information
Conserved circRNAs NA
PMCS 0.995829462
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs gma-miR5031
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021a