Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G09195_circ_g.2 |
ID in PlantcircBase | ath_circ_001593 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2969374-2970133 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G09195 |
Parent gene annotation |
Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR0066 74), Ppx/GppA phosphatase (InterPro:IPR003695) |
Parent gene strand | - |
Alternative splicing | AT1G09195_circ_g.1 AT1G09195_circ_g.3 AT1G09195_circ_g.4 |
Support reads | 1 |
Tissues | inflorescences |
Exon boundary | No-No |
Splicing signals | CC-TA |
Number of exons covered | AT1G09195.4:4 AT1G09195.6:4 AT1G09195.15:4 AT1G09195.3:4 AT1G09195.10:4 AT1G09195.7:4 AT1G09195.14:4 AT1G09195.11:4 AT1G09195.12:4 AT1G09195.1:4 AT1G09195.8:4 AT1G09195.2:4 AT1G09195.13:4 AT1G09195.9:4 AT1G09195.5:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.124346481 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |