Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G09195_circ_g.4 |
ID in PlantcircBase | ath_circ_001595 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2969575-2970134 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G09195 |
Parent gene annotation |
Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR0066 74), Ppx/GppA phosphatase (InterPro:IPR003695) |
Parent gene strand | - |
Alternative splicing | AT1G09195_circ_g.1 AT1G09195_circ_g.2 AT1G09195_circ_g.3 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G09195.3:3 AT1G09195.6:3 AT1G09195.8:3 AT1G09195.10:3 AT1G09195.2:3 AT1G09195.7:3 AT1G09195.4:3 AT1G09195.11:3 AT1G09195.14:3 AT1G09195.1:3 AT1G09195.13:3 AT1G09195.12:3 AT1G09195.5:3 AT1G09195.15:3 AT1G09195.9:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.138243542 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
2969647-2969577(-) |
Potential amino acid sequence |
MLVRYQRKKFPKLDRAPLKGFTGEEIYLGLRKCNDFKVILDDKDLEYLEAACFLHNIGIITGKK GYHKQSYHIIKNGDHLHSYTAEEIELIAMLVRYQRKKFPKLDRAPLKGFTGEEIYLGLRKCNDF KVILDDKDLEYLEAACFLHNIGIITGKKGYHKQSYHIIKNGDHLHSYTAEEIELIAMLVRYQRK KFPKLDRAPLKGFTGEEIYLGLRKCNDFKVILDDKDLEYLEAACFLHNIGIITGKKGYHKQSYH IIKNGDHLHSYTAEEIELIAMLVRYQRKKFPKLDRAPLKGFTGE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |