Detail information of Solyc04g016550.2_circ_g.2


General Information
CircRNA Name Solyc04g016550.2_circ_g.2
ID in PlantcircBase sly_circ_001337
Alias NA
Organism Solanum lycopersicum
Position chr4: 7376097-7380752  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method Segemehl, CIRI
Parent gene Solyc04g016550.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc04g016550.2_circ_g.1
Support reads NA
Tissues fruit
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Solyc04g016550.2.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTATCTTTCTCTAATATCGATCAAATGCGGCGAAGTGAAAAGTCCTGTTCTGAAACCACACTC
CCGTAAAATTACTTCAGAGAATGCACATGTTGAACCatcttcaaacaaccttccccagttccct
gtacttctaagccaacttttacaaagggatacagcaagggcaacattactgagctggtgatcac
cagtcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTTCAAACAACCTTCCCCAGTTCCCTGTACTTCTAAGCCAACTTTTACAAAGGGATACAGCA
AGGGCAACATTACTGAGCTGGTGATCACCAGTCAAGCTTAGCCTTGTTCCATTTAACTTTTCCA
AGGTTAGCGGTGCAACAACTTCCAGCAGAATCTGCATGGACACAGAGATAGTATTTTAGAAATC
TCTGTGTAGATACATACATTGTAGATCCCACTTTGGGAACGTTCAGTGCCTTGTCACTGAATGG
GTAAGTCGCCAATCCTTGGACTTTGTAATGTACTTTATCAGTTGGGTTACGGACGAACGATTTT
AAAGCGGACTTCGCCATTCGTAAGATAGAGAAGATCACCAAGATCTCGCGATCTACTGTCAAAT
TTGTTCCAATTCCAAGAGCTCGGATCAAATATATCATTACCGAAAGAGAGGATAGTAGCCAGTG
TTAAGAATATAGTAAATTAGTCAGAATTAATTAGATTGGGGTTCTTTCTAGTAATTAGGAATTC
AGAATACCCTCTCTAACACTTGTACACCCTCTATTTAGACCCAACAGCTTGGGGGAAAGATTAA
CCTGAGTTTATCTCAGTTTGCTATTCTCTGTCTCATTGTACAATTACAACATAGTTACATGATG
AATGGTTAAATTTGTTAATAGATAACCGACATCTTTCCTGAGATTATATGACTGTTTTCTGCAT
CTAGTTATAATATATAAGGCCATGTAGAGCCATATATACATGCAAGGAAATGATATTTTGGCGA
TACAGAAACACTCAAAGATTAGTGAAACTTGCTTTCCATAGGATACTAATGATATAGTCACTTT
TCAAATCATGATTCTTCTGTTCACGGAAATATTTTAGACCCATTCAAATTATGGGATTATGGGT
AAACCGGTAAATAAAATATTACATCAATAAAAACTGCCTAAGTGTAAGAAACTTGATTGAGTTT
TGCCAAAAGGGGTGATCTTAAGACATGAATTTAAAGATAAATAAACATTAGTCACTAGCTCATA
TATCCAAGAGGTAATGTTCAAATGATTACCTTCAATGCATTGGCCCTTTCTTGAAGAACTTCCA
TTGCTTCAGAAAGTTGTGGTACGCTGAATGCAGGAATTTGAGGCTTCACAAGCAGGAAAAATAA
GCCAATTCAGATATTACTTCATAATGTAACTGCCAGCTCAAGATATGGGCAGGATTTTTCCATG
AACAATCCACTATAAACAAAAACATATGACACTTTCGAAATTCCATAAAAGAAAGTACCTTGAG
AATTCCAGCCTTGTGAGAAGCAATCTGGCCTAGCGTATATCCTATACGTATTAGTTGGCAGATA
AACAAGTAATGTCAAAAAGGTGCTCTGGTAGCCATCCAGCAAAGCCATTATTAAAAAGAATTTG
TGTGTGCTTATCCATGAAATGGAATCAGGTCCAAAAAAAGTGTCATCTCTAACAACTTAAACTT
TTAGATGAGATATTCACACAACTCAGCCCATTAAATAGCATATCTAAGTTGAAGCAGCTGAGCT
TATGAACCCATGCTTTTGGCTTGTGTATGCTTTTATTAGACATTTTTAGAATAGACCTGAATTG
TCTCAACTAAAACTTTAAGTCTTTATAAATTAGAGACATTTAATATTCAATTTAGGGTTAGTAA
CACCACTTAAATGTCAATACTATTACATATTTAATACTCGAATTAATAGAATATTGGTCTCACC
GAGCATAATACAGCTATCTACCTAGTAAAGTGTGTCATAAAAGGAACACGCATTTTGTCAACCT
CTTCTCCTTGTTCTTATTTCTAACATCATATAGAAAGTAACGAACAAGTCAATAGAGGACAGAA
AGACATACCTAAAGTCTCCATGTGATCCATGCCCAGAGAAGTAATACCACAGACAACAGGTTCC
TTGATCTGCAAAATTATTTTATCAAATAGTTGCATGCTCATCAATGCCAAGGAAACAAATTATT
TCCCAACATAAAGCAGAAAGATTTCTCCAACGTCCATGCTACCTTGCGTATAATATATGTAGGA
GCAACATGAATACCCAATAAGATGCATTACCACATTCGTAGAATCCAGTTTTCCTCCAAGACCA
ACTTCAATGATGGCAACATCAACCTGTGCAGGTATAGCAAGTCTTGTTACATAATTGTTGAGGT
ACTTGTTTTGTTCTTGTTGGAAAACCCAGAATATAGACTACAGATTTTGGTTGCAATTTTTTTA
ATAAAGTAAATAACATTATTAATGGCCGGTACTCATATATTAGAAGTATACCAAAAAGTAGAGA
ATCTACAATTAAACATGATTATATATGAAAGACACCTAATCATTTATACAAGTAGGAATCTCAA
GGGTGCACCAAAAAAGCAATCAAAGACAAAAGGTTATTCCTCAAATGTACAAAATCATTGAGGG
TGTTTGGATTGACTTATTTTAAGTAGCTTTTGGCTTTTAGCTCCTTTTTATTTTGGAGGTGTTT
GGGAAAGACTAAATGCTTTTAAGCACTTGCTTTTAGGTGAAAAAGGTACAGAAGTAATCTAAAA
TCCAAAAGTTGGGTAGGACCAACTTATGACTTTTATCTTTTAGCTTATAAGCTACTTAATAAAA
GCTAATCCAAAAAACCCCTTAGTCCCCTCAAAGCTCTCCTATTTCTAATTGAAAAGAGAAAGTT
CTTGATTTTAGCTTGATTTATCCCATATCATTTCAAAGCTTGAGTATAAATGATATGAACCAAT
ACTTGTACATCTCTAACACTATCAAGATGGCTTACAAAATAAAGGAGAGTTTAAAAGGTATTGT
AAGTTCTCATCTAGAATGAAGATCCAATGCCTTGTCAAAGTAAATATTTGTTAGGTAATAATAT
TCAATCAGGAAGTCAAGGTCAGAGGATGAATTAGTCTTATTCCTTAGTAATTTTGTTCCGAGTG
CTGATTTTTCTATGGTCGGTTTCTTATGGGGCCATGATAATTGGAGAGCAATATCAATTTGTCT
TTTGATAATTCCACCAGAAACGAATTGTATACAACTTCCAAGCACATCGTAGAAAATAAAGATT
AGCAGTAGGACTCATAACTTGGTCTTTGTTACTTCAATAATTTTATTTCAGGTTTTCGTTTTCC
TACAGTTATCATTTTTGAGAGCAACATCAGTATTCTAATATGGATATGCCACAAGCTATAAACT
ATAGACAACTTTCAAGCACATCTTAAAAAAGAGAAGATAAACACCAAAAGCCAAATAAAACCTT
ATCAATGGAACTTCAAATCAAACACTGAACGCATATCCAAATCAAGCAAAATATAGGGAAAGGT
TCCTACCTTCTCGCTCACAAAAATTTTGAAAGCCAATACAGTAAGGAACTGGAAGAGAGGAGGC
ATAGGCAAGTCTTCAGAGATGTTGGCCTGCAAAATAACATTTCTGGGATGAGTAAGAACTAACC
ATCAAAAGTTTTACGGAATGCAGATTACTCCTAGCATGAGAGAATTATACTTAACTCTCATCCA
ACACAAACCATTAAAACAAAGTAAAAGAACTTCCTAGCATGAGTTTAACTAAGTCATATTGTAC
TATATTGGACAATGCATATAAGCGAATGATGAAGCCTGGAGATGTTAGATCAAGCAAATGAAGG
ATTACTATTAAAATATGTGAACCAGTAAAATTACAAAAATCTAGACAGCATTAACATGATTTTT
CCAATATGCTGTAACTAGTATAATCCCGCTGCGATCTTGAATTATTATAAAAAGAACGTCTTCA
TCTTTGAACTAGAAAAAATACATAACACTACATAAACGTGAAAAAGAGAACCAACTAACATGTA
GTCAAGGTAACTCGAAAGATCCACTACCATAATTAGATAAGAGGCATCTTTTCATCCAGCACAG
AGCCGAAAATGAAAGAATACCTTGAGTTGATTCCAACAATCCCAAAAGTACTGAAGAAAATTTT
CTTGGCATATGTCTATCCTACGCAACACGTTGAACGGAATGAGAAATGTCATCAATAATTCAAC
TACAATCAAATATAGGGAAGATATCAATCACATAAAAATAACCAATTAACATCAATGAAGCTCA
ATTTGAAATTTCAGTAGGAATCCCTTGTCTACATCAAGACATACCAAGTACCATTTAAAATCGA
CGGGCTATTGAGTTATTCCCTATCTGTTGATTGTTTTCTACAAAAACCTCATTGGGTGCATTTA
GTAGGATGATGAACGATAAAAGAACACCCAAAGTATTGGTTTTAAATCCTATATGAAAAGTGAA
ATGAGGGAGGAAAATCACACCTGTTACCTAGATCGTCTGCATGGTCAGCGAGAAAGTATTGAAG
TCCATGAAAAGAAAAAGATCGAAATACTCCCAGTTTATTTTGTTAAAGTGAAGAAACTTGCTTC
CATCCATCAAGTTTCCTTCCATGCCTTTTCTTCTCATTCAACTTTTCAATACACGGGAACTCTC
CCCTCCCCCCACCGATTGAGTAGCACAGACACTGAAGATGCTCTATTCAGTAACAAGAATACGT
ATCCATCAAGACGGTATCTTTCTCTAATATCGATCAAATGCGGCGAAGTGAAAAGTCCTGTTCT
GAAACCACACTCCCGTAAAATTACTTCAGAGAATGCACATGTTGAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.710138146
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017