Detail information of Solyc04g016550.2_circ_g.1


General Information
CircRNA Name Solyc04g016550.2_circ_g.1
ID in PlantcircBase sly_circ_001336
Alias NA
Organism Solanum lycopersicum
Position chr4: 7376093-7380752  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method Segemehl, CIRI
Parent gene Solyc04g016550.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc04g016550.2_circ_g.2
Support reads NA
Tissues fruit
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Solyc04g016550.2.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTATCTTTCTCTAATATCGATCAAATGCGGCGAAGTGAAAAGTCCTGTTCTGAAACCACACTC
CCGTAAAATTACTTCAGAGAATGCACATGTTGAACCcaacatcttcaaacaaccttccccagtt
ccctgtacttctaagccaacttttacaaagggatacagcaagggcaacattactgagctggtga
tcaccagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAACATCTTCAAACAACCTTCCCCAGTTCCCTGTACTTCTAAGCCAACTTTTACAAAGGGATAC
AGCAAGGGCAACATTACTGAGCTGGTGATCACCAGTCAAGCTTAGCCTTGTTCCATTTAACTTT
TCCAAGGTTAGCGGTGCAACAACTTCCAGCAGAATCTGCATGGACACAGAGATAGTATTTTAGA
AATCTCTGTGTAGATACATACATTGTAGATCCCACTTTGGGAACGTTCAGTGCCTTGTCACTGA
ATGGGTAAGTCGCCAATCCTTGGACTTTGTAATGTACTTTATCAGTTGGGTTACGGACGAACGA
TTTTAAAGCGGACTTCGCCATTCGTAAGATAGAGAAGATCACCAAGATCTCGCGATCTACTGTC
AAATTTGTTCCAATTCCAAGAGCTCGGATCAAATATATCATTACCGAAAGAGAGGATAGTAGCC
AGTGTTAAGAATATAGTAAATTAGTCAGAATTAATTAGATTGGGGTTCTTTCTAGTAATTAGGA
ATTCAGAATACCCTCTCTAACACTTGTACACCCTCTATTTAGACCCAACAGCTTGGGGGAAAGA
TTAACCTGAGTTTATCTCAGTTTGCTATTCTCTGTCTCATTGTACAATTACAACATAGTTACAT
GATGAATGGTTAAATTTGTTAATAGATAACCGACATCTTTCCTGAGATTATATGACTGTTTTCT
GCATCTAGTTATAATATATAAGGCCATGTAGAGCCATATATACATGCAAGGAAATGATATTTTG
GCGATACAGAAACACTCAAAGATTAGTGAAACTTGCTTTCCATAGGATACTAATGATATAGTCA
CTTTTCAAATCATGATTCTTCTGTTCACGGAAATATTTTAGACCCATTCAAATTATGGGATTAT
GGGTAAACCGGTAAATAAAATATTACATCAATAAAAACTGCCTAAGTGTAAGAAACTTGATTGA
GTTTTGCCAAAAGGGGTGATCTTAAGACATGAATTTAAAGATAAATAAACATTAGTCACTAGCT
CATATATCCAAGAGGTAATGTTCAAATGATTACCTTCAATGCATTGGCCCTTTCTTGAAGAACT
TCCATTGCTTCAGAAAGTTGTGGTACGCTGAATGCAGGAATTTGAGGCTTCACAAGCAGGAAAA
ATAAGCCAATTCAGATATTACTTCATAATGTAACTGCCAGCTCAAGATATGGGCAGGATTTTTC
CATGAACAATCCACTATAAACAAAAACATATGACACTTTCGAAATTCCATAAAAGAAAGTACCT
TGAGAATTCCAGCCTTGTGAGAAGCAATCTGGCCTAGCGTATATCCTATACGTATTAGTTGGCA
GATAAACAAGTAATGTCAAAAAGGTGCTCTGGTAGCCATCCAGCAAAGCCATTATTAAAAAGAA
TTTGTGTGTGCTTATCCATGAAATGGAATCAGGTCCAAAAAAAGTGTCATCTCTAACAACTTAA
ACTTTTAGATGAGATATTCACACAACTCAGCCCATTAAATAGCATATCTAAGTTGAAGCAGCTG
AGCTTATGAACCCATGCTTTTGGCTTGTGTATGCTTTTATTAGACATTTTTAGAATAGACCTGA
ATTGTCTCAACTAAAACTTTAAGTCTTTATAAATTAGAGACATTTAATATTCAATTTAGGGTTA
GTAACACCACTTAAATGTCAATACTATTACATATTTAATACTCGAATTAATAGAATATTGGTCT
CACCGAGCATAATACAGCTATCTACCTAGTAAAGTGTGTCATAAAAGGAACACGCATTTTGTCA
ACCTCTTCTCCTTGTTCTTATTTCTAACATCATATAGAAAGTAACGAACAAGTCAATAGAGGAC
AGAAAGACATACCTAAAGTCTCCATGTGATCCATGCCCAGAGAAGTAATACCACAGACAACAGG
TTCCTTGATCTGCAAAATTATTTTATCAAATAGTTGCATGCTCATCAATGCCAAGGAAACAAAT
TATTTCCCAACATAAAGCAGAAAGATTTCTCCAACGTCCATGCTACCTTGCGTATAATATATGT
AGGAGCAACATGAATACCCAATAAGATGCATTACCACATTCGTAGAATCCAGTTTTCCTCCAAG
ACCAACTTCAATGATGGCAACATCAACCTGTGCAGGTATAGCAAGTCTTGTTACATAATTGTTG
AGGTACTTGTTTTGTTCTTGTTGGAAAACCCAGAATATAGACTACAGATTTTGGTTGCAATTTT
TTTAATAAAGTAAATAACATTATTAATGGCCGGTACTCATATATTAGAAGTATACCAAAAAGTA
GAGAATCTACAATTAAACATGATTATATATGAAAGACACCTAATCATTTATACAAGTAGGAATC
TCAAGGGTGCACCAAAAAAGCAATCAAAGACAAAAGGTTATTCCTCAAATGTACAAAATCATTG
AGGGTGTTTGGATTGACTTATTTTAAGTAGCTTTTGGCTTTTAGCTCCTTTTTATTTTGGAGGT
GTTTGGGAAAGACTAAATGCTTTTAAGCACTTGCTTTTAGGTGAAAAAGGTACAGAAGTAATCT
AAAATCCAAAAGTTGGGTAGGACCAACTTATGACTTTTATCTTTTAGCTTATAAGCTACTTAAT
AAAAGCTAATCCAAAAAACCCCTTAGTCCCCTCAAAGCTCTCCTATTTCTAATTGAAAAGAGAA
AGTTCTTGATTTTAGCTTGATTTATCCCATATCATTTCAAAGCTTGAGTATAAATGATATGAAC
CAATACTTGTACATCTCTAACACTATCAAGATGGCTTACAAAATAAAGGAGAGTTTAAAAGGTA
TTGTAAGTTCTCATCTAGAATGAAGATCCAATGCCTTGTCAAAGTAAATATTTGTTAGGTAATA
ATATTCAATCAGGAAGTCAAGGTCAGAGGATGAATTAGTCTTATTCCTTAGTAATTTTGTTCCG
AGTGCTGATTTTTCTATGGTCGGTTTCTTATGGGGCCATGATAATTGGAGAGCAATATCAATTT
GTCTTTTGATAATTCCACCAGAAACGAATTGTATACAACTTCCAAGCACATCGTAGAAAATAAA
GATTAGCAGTAGGACTCATAACTTGGTCTTTGTTACTTCAATAATTTTATTTCAGGTTTTCGTT
TTCCTACAGTTATCATTTTTGAGAGCAACATCAGTATTCTAATATGGATATGCCACAAGCTATA
AACTATAGACAACTTTCAAGCACATCTTAAAAAAGAGAAGATAAACACCAAAAGCCAAATAAAA
CCTTATCAATGGAACTTCAAATCAAACACTGAACGCATATCCAAATCAAGCAAAATATAGGGAA
AGGTTCCTACCTTCTCGCTCACAAAAATTTTGAAAGCCAATACAGTAAGGAACTGGAAGAGAGG
AGGCATAGGCAAGTCTTCAGAGATGTTGGCCTGCAAAATAACATTTCTGGGATGAGTAAGAACT
AACCATCAAAAGTTTTACGGAATGCAGATTACTCCTAGCATGAGAGAATTATACTTAACTCTCA
TCCAACACAAACCATTAAAACAAAGTAAAAGAACTTCCTAGCATGAGTTTAACTAAGTCATATT
GTACTATATTGGACAATGCATATAAGCGAATGATGAAGCCTGGAGATGTTAGATCAAGCAAATG
AAGGATTACTATTAAAATATGTGAACCAGTAAAATTACAAAAATCTAGACAGCATTAACATGAT
TTTTCCAATATGCTGTAACTAGTATAATCCCGCTGCGATCTTGAATTATTATAAAAAGAACGTC
TTCATCTTTGAACTAGAAAAAATACATAACACTACATAAACGTGAAAAAGAGAACCAACTAACA
TGTAGTCAAGGTAACTCGAAAGATCCACTACCATAATTAGATAAGAGGCATCTTTTCATCCAGC
ACAGAGCCGAAAATGAAAGAATACCTTGAGTTGATTCCAACAATCCCAAAAGTACTGAAGAAAA
TTTTCTTGGCATATGTCTATCCTACGCAACACGTTGAACGGAATGAGAAATGTCATCAATAATT
CAACTACAATCAAATATAGGGAAGATATCAATCACATAAAAATAACCAATTAACATCAATGAAG
CTCAATTTGAAATTTCAGTAGGAATCCCTTGTCTACATCAAGACATACCAAGTACCATTTAAAA
TCGACGGGCTATTGAGTTATTCCCTATCTGTTGATTGTTTTCTACAAAAACCTCATTGGGTGCA
TTTAGTAGGATGATGAACGATAAAAGAACACCCAAAGTATTGGTTTTAAATCCTATATGAAAAG
TGAAATGAGGGAGGAAAATCACACCTGTTACCTAGATCGTCTGCATGGTCAGCGAGAAAGTATT
GAAGTCCATGAAAAGAAAAAGATCGAAATACTCCCAGTTTATTTTGTTAAAGTGAAGAAACTTG
CTTCCATCCATCAAGTTTCCTTCCATGCCTTTTCTTCTCATTCAACTTTTCAATACACGGGAAC
TCTCCCCTCCCCCCACCGATTGAGTAGCACAGACACTGAAGATGCTCTATTCAGTAACAAGAAT
ACGTATCCATCAAGACGGTATCTTTCTCTAATATCGATCAAATGCGGCGAAGTGAAAAGTCCTG
TTCTGAAACCACACTCCCGTAAAATTACTTCAGAGAATGCACATGTTGAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.740750083
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017