Detail information of Os03g0197400_circ_g.1


General Information
CircRNA Name Os03g0197400_circ_g.1
ID in PlantcircBase osa_circ_018370
Alias NA
Organism Oryza sativa
Position chr3: 5119909-5119968  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os03g0197400
Parent gene annotation Similar to COP9 signalosome complex subunit 4 (Signalosome subun
it 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein
4) (FUSCA4) (AtS4). (Os03t0197400-01);Similar to COP9 signaloso
me complex subunit 4 (Signalosome subunit 4) (Constitutive photo
morphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4). (Os0
3t0197400-02)
Parent gene strand -
Alternative splicing Os03g0197400_circ_g.2 Os03g0197400_circ_g.3 Os03g0197400_circ_g.4
Support reads 2
Tissues pistil
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0197400-02:1
Os03t0197400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCATCCTCAAAATGTATCACAGCTTCAACctgttggtcccactgctgcagctcttcagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTGGTCCCACTGCTGCAGCTCTTCAGTGTCATCCTCAAAATGTATCACAGCTTCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.710402798
Functional Information
Coding potential Y
Potential coding position 5119952-5119965(+)
Potential amino acid sequence MYHSFNLLVPLLQLFSVILKMYHSFNLLVPLLQLFSVILKMYHSFNLLVPLLQLFSVILKMYHS
FN(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017