Detail information of Os03g0197400_circ_g.4


General Information
CircRNA Name Os03g0197400_circ_g.4
ID in PlantcircBase osa_circ_018373
Alias NA
Organism Oryza sativa
Position chr3: 5122586-5122689  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0197400
Parent gene annotation Similar to COP9 signalosome complex subunit 4 (Signalosome subun
it 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein
4) (FUSCA4) (AtS4). (Os03t0197400-01);Similar to COP9 signaloso
me complex subunit 4 (Signalosome subunit 4) (Constitutive photo
morphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4). (Os0
3t0197400-02)
Parent gene strand -
Alternative splicing Os03g0197400_circ_g.1 Os03g0197400_circ_g.2 Os03g0197400_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0197400-02:1
Os03t0197400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGTTGTTCAGACTCATACAGTTCTGCAAGCTTCTCTCTAATCACTACCACctgatccctgag
tccaagtcaatcccactaagcatctgtgcagcttttgacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATCCCTGAGTCCAAGTCAATCCCACTAAGCATCTGTGCAGCTTTTGACCATTGTTGTTCAG
ACTCATACAGTTCTGCAAGCTTCTCTCTAATCACTACCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.547239744
Functional Information
Coding potential Y
Potential coding position 5122657-5122678(-)
Potential amino acid sequence MSLNNNGQKLHRCLVGLTWTQGSGGSD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017