Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | BGIOSGA031063_circ_g.4 |
ID in PlantcircBase | osi_circ_008158 |
Alias | 9:18471774|18474710 |
Organism | Oryza sativa ssp. indica |
Position | chr9: 18471774-18474710 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA031063 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA031063_circ_g.1 BGIOSGA031063_circ_g.2 BGIOSGA031063_circ_g.3 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA031063-TA:11 |
Conservation Information | |
---|---|
Conserved circRNAs | osa_circ_039758* |
PMCS |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
18471949-18474449(-) 18471775-18474707(+) 18474496-18471774(+) |
Potential amino acid sequence |
MHLDTLPPLHPSEKQKDQQTFLHRVQSSALHGQSSVGQPSSRDWQHRAWVHQLQQFSQLVHQDI QSFPQQQTCISQHQSHAVGSFPQWSPIYLFF*(-) MTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIA VGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQ CYAAWYAHVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALP IGKAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNR LVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALN SALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIAVGAAYQGL RPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAH VPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIER EGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESF PQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALNSALDEEMS ADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIAVGAAYQGLRPVVEFMT FNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLA PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIEREGKDVTIT AYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAE ICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALNSALDEEMSADPSVFLM GEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQAI DHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLAPYSAEDAR GLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIEREGKDVTITAYSKMVGY ALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEE SFEYLDAPVERIAGADVPMPYAANLERMAVPQ(+) MGLVLRYACLLLRKALNILMHQLRELLELMYPCPMLPISRGWLSHR*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Huang et al., 2021 |