Detail information of BGIOSGA031063_circ_g.4


General Information
CircRNA Name BGIOSGA031063_circ_g.4
ID in PlantcircBase osi_circ_008158
Alias 9:18471774|18474710
Organism Oryza sativa ssp. indica
Position chr9: 18471774-18474710  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031063
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA031063_circ_g.1 BGIOSGA031063_circ_g.2 BGIOSGA031063_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA031063-TA:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAAGCTTTGAATATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTGATGTACCCATGCCC
TATGCTGCCAATCTCGAGAGGATGGCTGTCCCACAGatgactgtccgtgaagcgctgaactctg
cactcgatgaagaaatgtctgctgatccttctgtttttctgatgggtgaagaggtacacttgga
actcactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGACTGTCCGTGAAGCGCTGAACTCTGCACTCGATGAAGAAATGTCTGCTGATCCTTCTGTTT
TTCTGATGGGTGAAGAGGTACACTTGGAACTCACTCACTTTCTCTCCCTGATTTGTGTGTTTTT
CTAAGGCCTTCTCTTTCGTGGCAGGTGGGAGAGTATCAAGGTGCATACAAGGTGTGTGAAGTTA
AAAAATATTAGTAGTTGTGCCTTTCCTCAGGTCCGCTGTAAACGTATTAGCTCTTATCGTTGTT
CATGAAGTGTATTCTGTTGCAGATTTCAAAGGGCTTGCTTGACAAGTATGGTCCTGACAGGGTT
CTGGATACACCAATCACAGAGGTGATTCTAAAAACCTTCTTACCTACCTTTCTTTTCTGCCCAT
TCACATTTTTTTCACACTAAGGTATCATGCGTTCATGTTCTAGTACTTATCTGCTTCAGTTCTG
CTTTTCCAGGCTGGGTTTACTGGCATTGCTGTTGGTGCAGCATATCAAGGTCTTCGACCTGTTG
TAGAGTTCATGACATTCAATTTCTCAATGCAGGTTGGTAATGCACGAATTATCAATATGCTACT
ATGATAGTGGAATCAGTTTATATTGTTGCTTGCAGCAAAGGATTGCTGTTGAATTTTATATTAG
TTTTTGTCTATGTAAAGCAATGTAACACTTAGGTAAGTATGTTGTACAACTAGTTTGTTAATTT
GCTAGTATAGATTATCTCTTCCTGCATTTTAGTTAAACCATACTCTAATCCATATTGTACACAT
GCTTGATAAAGTGTTCATCACTCAGGATCTAGTGTGCGGAGGTCCACCTTCTTTGATAGAAACC
CTCTTTTTTTTTTCTGAAGCTTAATAATTGACATATATTTATCAGGGGTACCTCATTAGTGTTT
ACTTCTGCATTATTTGTACCAATGACATATTTCAGTTTTTGTATGCTGTGATTTCGTTTTAATT
ATTTATATTACACATTCAGGCAATTGATCATATCATCAATTCAGCTGCCAAGTCAAACTACATG
TCAGCGGGTCAGATATCTGTCCCTATTGTTTTCAGAGGACCTAATGGAGCTGCTGCTGGAGTTG
GCGCTCAACACTCGCAGGTTTGTGATCAGGGAATGGCTTATGAATTAGTTTATCATCCTAGGAC
CCCATTGAACTTTGTAAAAGTTCATTGTTTCCTTTTGTTGTGTTGTTCTACCCAGAAACTGTCC
TGGATGATCTGGCAACCTCTTTGCTAATGCTGAAATACTTAATATCCCCCTCTCCCCAAAATGC
TGGTCTTTAGGTGTAGAAAAGAAACCAAAGATTAATTATGAGAGTTCTTTACAGCATGTGAAGC
TGCAGTGAGCTGAGCAGGAAGTTTGACTGTTTAAGATCAGTTTGCCACTAGCTTTTATATTCTG
GCTTTTTAGGCATCACTTGTTTTTGATAAATCATGGTAGAATTATTTTGCCACTTAAATATGTC
ATTATAATTGCAATTATTCATTTACAAACTGAATTGGTTTGCAGTGTTATGCGGCTTGGTATGC
ACATGTTCCGGGTCTTAAGGTTCTGGCTCCATATTCTGCAGAAGATGCTCGTGGCTTGCTCAAA
GCTGCGATTAGGGATCCGGACCCTGTTGTTTTCTTGGAAAATGAACTGCTGTATGGAACATGAT
CTTGTTATGCTATACTGACTAGCCGTCATTTCCCCAAGATGCTGATATACTATTTTCTGCAGCT
ATGGAGAATCATTCCCTATTTCTGCTGAAGTGCTTGATTCTAGTTTCGCTCTGCCAATTGGCAA
AGCAAAGGTATGTTGTACTAGCTGTGTACACATGTTTGGGAAAGAAACATACTTGCATAGAATT
ACCTTGATTATTTCACAGGAGTCCCTTTTAATGAACACCTTGTTTTCTAGATAAGTGTATACCA
GATACATGCTGATATATATTTCTGTTATACAGTCAGTGAAGTTTGATGTACTTACCTGTGGGTC
TTCTCTCTGTAGATAGAGCGTGAGGGTAAAGATGTTACAATTACTGCATACTCCAAGATGGTTG
GATATGCTCTTCAGGTGCGTCATTTTGTAATTGGTAAACAATATGGATGATGAGTATGTTACGT
CGATAACTTTATATGTTTTGGCTCATCATTTGCGCAGTTTTCTATGGTGTGGCATATCATATCT
CTGTAAATTCTGATTACTGTATGTCTGTAGCGGCACTTGTGAGCTATGCCTTTTGGGAATAGCA
ATTTATTTTTCATTTTGTGCGGATAGAGGGATCGTTTATCAAACAGATGGTTGGTACGTCCATA
AGTCTGATAGTTAAATTGATCTGCCATATTGTTCCTCAGAAAGTGTATGTTTCTTTCAGTTTAT
GCTATTTGAGGTTTTAAGTAGTACCAGCGGTACTTAAAATCTTTCACATATTTATGATTGCAAT
ATTACTTTTCTATGTTCTTATGCTCAATTTTTTTCAGGCCGCAGATATATTGTCCAAAGAAGGA
ATCAGTGCTGAGGTGATCACTTGTTAAACAATTTATGTTCAGTATAAAAATCTATAATGCATCA
ATCTTTTCAACCACATACTGCAAAAGTTTCCTTATTTTTTACTGCTATTTGCCAATAGGTGATA
AACCTTCGTTCAATTAGACCACTTGATAGAGCTACTATCAATGCATCTGTTAGAAAAACAAATA
GATTGGTGACCATTGAGGAAAGCTTCCCACAGCATGGGATTGGTGCTGAGATATGGTACGCTCT
CTCTCCACATGCATTGGCACACCTGTGTGTGGATAAGGACTTTTAGTTCTGACACTCGTTTTCT
TTGCAGCATGTCTGTTGTTGAGGAAAGCTTTGAATATCTTGATGCACCAGTTGAGAGAATTGCT
GGAGCTGATGTACCCATGCCCTATGCTGCCAATCTCGAGAGGATGGCTGTCCCACAG
Conservation Information
Conserved circRNAs osa_circ_039758*
PMCS
Functional Information
Coding potential Y
Potential coding position 18471949-18474449(-)
18471775-18474707(+)
18474496-18471774(+)
Potential amino acid sequence MHLDTLPPLHPSEKQKDQQTFLHRVQSSALHGQSSVGQPSSRDWQHRAWVHQLQQFSQLVHQDI
QSFPQQQTCISQHQSHAVGSFPQWSPIYLFF*(-)
MTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIA
VGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQ
CYAAWYAHVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALP
IGKAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNR
LVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALN
SALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIAVGAAYQGL
RPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAH
VPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIER
EGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESF
PQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALNSALDEEMS
ADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIAVGAAYQGLRPVVEFMT
FNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLA
PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIEREGKDVTIT
AYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAE
ICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALNSALDEEMSADPSVFLM
GEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQAI
DHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLAPYSAEDAR
GLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIEREGKDVTITAYSKMVGY
ALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEE
SFEYLDAPVERIAGADVPMPYAANLERMAVPQ(+)
MGLVLRYACLLLRKALNILMHQLRELLELMYPCPMLPISRGWLSHR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021