Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os09g0509200_circ_g.3 |
ID in PlantcircBase | osa_circ_039758 |
Alias | Os_ciR3488 |
Organism | Oryza sativa |
Position | chr9: 19754377-19757311 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os09g0509200 |
Parent gene annotation |
Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC 1.2.4.1). (Os09t0509200-01);Similar to (Rice Genome Annotation P roject) pyruvate dehydrogenase E1 component subunit beta. (Os09t 0509200-02) |
Parent gene strand | + |
Alternative splicing | Os09g0509200_circ_g.1 Os09g0509200_circ_g.2 Os09g0509200_circ_g.4 |
Support reads | 3/2 |
Tissues | root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os09t0509200-01:11 Os09t0509200-02:11 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_008158* osi_circ_018632 |
PMCS | 0.132652056 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
19754378-19757308(+) 19757097-19754377(+) 19754552-19757050(-) |
Potential amino acid sequence |
MTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIA VGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQ CYAAWYAHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALP IGKAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNR LVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALN SALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGL RPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAH VPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIER EGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESF PQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALNSALDEEMS ADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMT FNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLV PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIEREGKDVTIT AYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAE ICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALNSALDEEMSADPSVFLM GEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQAI DHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLVPYSAEDAR GLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIEREGKDVTITAYSKMVGY ALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEE SFEYLDAPVERIAGADVPMPYAANLERMAVPQ(+) MGLVLRYACLLLRKALNILMHQLRELLELMYPCPMLPILRGWLSHR*(+) MHLDTLPPLHPSEKQKDQQTFLHRVQSSALHGQSSVGQPSSQDWQHRAWVHQLQQFSQLVHQDI QSFPQQQTCISQHQSHAVGSFPQWSPIYLFF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017 |