Detail information of Os09g0509200_circ_g.3


General Information
CircRNA Name Os09g0509200_circ_g.3
ID in PlantcircBase osa_circ_039758
Alias Os_ciR3488
Organism Oryza sativa
Position chr9: 19754377-19757311  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os09g0509200
Parent gene annotation Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC
1.2.4.1). (Os09t0509200-01);Similar to (Rice Genome Annotation P
roject) pyruvate dehydrogenase E1 component subunit beta. (Os09t
0509200-02)
Parent gene strand +
Alternative splicing Os09g0509200_circ_g.1 Os09g0509200_circ_g.2 Os09g0509200_circ_g.4
Support reads 3/2
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0509200-01:11
Os09t0509200-02:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAAGCTTTGAATATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTGATGTACCCATGCCC
TATGCTGCCAATCTTGAGAGGATGGCTGTCCCACAGatgactgtccgtgaagcgctgaactctg
cactcgatgaagaaatgtctgctgatccttctgtttttctgatgggtgaagaggtacacttgga
actcactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGACTGTCCGTGAAGCGCTGAACTCTGCACTCGATGAAGAAATGTCTGCTGATCCTTCTGTTT
TTCTGATGGGTGAAGAGGTACACTTGGAACTCACTCACTTTCTCTCCCTGATTTGTGTGTTTTT
CTAAGGCCTTCTCTTTCGTGGCAGGTGGGAGAGTATCAAGGTGCATACAAGGTGTGTGAAGTTA
AAAAATATTAGTAGTTGTGCCTTTCCTCAGGTCCGCTGTAAACGTATTAGCTCTTATCGTTGTT
CATGAAGTGTATTCTGTTGCAGATTTCAAAGGGCTTGCTTGACAAGTATGGTCCTGAGAGGGTT
CTGGATACACCAATCACAGAGGTGATTCTAAAAACCTTCTTACCTACCTTTCTTTTCTGCCCAT
TCACATTTTTTTCACACTAAGGTATCATGCGTTCATGTTCTAGTACTTATCTGCTTCAGTTCTG
CTTTTCCAGGCTGGGTTTACTGGCATTGCTGTTGGTGCAGCGTATCAAGGTCTTCGACCTGTTG
TAGAGTTCATGACATTCAATTTCTCAATGCAGGTTGGTAATGCACGAATTATCAATATGCTACT
ATGATAGTGGAATCAGTTTATATTGTTGCTTGCAGCAACGGATTGCTGTTGAATTTTATATTAG
TTTTTGTCTATGTAAAGCAATGTAACACTTAGGTAAGTATGTTGTACAACTAGTTTGTTAATTT
GCTAGTATAGATTATCTTTCCTGCATTTTAGTTAAACCATACTCTAATCCATATTGTACACATG
CTTGATAAAGTGTTCGTCACTCAGGATCTAGTGTTCGGAGGTCCACCTTCTTTGATAAGAAACC
CTCTTTTTTTTTTCTGAAGCTTAATAATTGACATATATTTATCAGGTGTACCTCATTAGTGTTT
ACTTCTGCATTATTTGTACCAATGACATATTTCAGTTTTTGTATGCTGTGATTTCGTTTTAATT
ATTTATATTACACATTCAGGCAATTGATCATATCATCAATTCAGCTGCCAAGTCAAACTACATG
TCAGCGGGTCAGATATCTGTCCCTATTGTTTTCAGAGGACCTAATGGAGCTGCTGCTGGAGTTG
GCGCTCAACACTCGCAGGTTTGTGATCAGGGAATGGCTTATGAATTAGTTTATCATCCTAGGAC
CCCATTGAACTTTGTAAAAGTTCATTGTTTCCTTTTGTTGTGTTGTTCTACCCAGAAACTGTCC
TGGATGATCTGGCAACCTCTTTGCTAATGCTGAAATACTTAATATCCCCCTCTCCCCAAAATGC
TGGTCTTTAGGTGTAGAAAAGAAACCAAAGATTAATTATGAGAGTTCTTTACAGCATGTGAAGC
TGCAGTGAGCTGAGCAGGAAGTTTGACTGTTTAAGATCAGTTTGCCACTAGCTTTTATATTCTG
GCTTTTTAGGCATCACTTGTTTTTGATAAATCATGGTAGAATTATTTTGCCACTTAAATATGTC
ATTATAATTGCAATTATTCATTTACAAACTGAATTGGTTTGCAGTGTTATGCGGCTTGGTATGC
ACATGTTCCGGGTCTTAAGGTTCTGGTTCCATATTCTGCAGAAGATGCTCGTGGCTTGCTCAAA
GCTGCGATTAGGGATCCGGACCCTGTTGTTTTCTTGGAAAATGAACTGCTGTATGGAACATGAT
CTTGTTATGCTATACTGACTAGCCGTCATTTCCCCAAGATGCTGATATACTATTTTCTGCAGCT
ATGGAGAATCATTCCCTATTTCTGCTGAAGTGCTTGATTCTAGTTTCGCTCTGCCAATTGGCAA
AGCAAAGGTATGTTGTACTAGCTGTGTACACATGTTTGGGAAAGAAACATACTTGCATAGAATT
ACCTTGATTATTTCACAGGAGTCCCTTTTAATGAACACCTTGTTTTCTAGATAAGTGTATACCA
GATACATGCTGATATATATTTCTGTTATACAGTCAGTGAAGTTTGATGTACTTACCTGTGGGTC
TTCTCTCTGTAGATAGAGCGTGAGGGTAAAGATGTTACAATTACTGCATACTCCAAGATGGTTG
GATATGCTCTTCAGGTGCGTCATTTTGTAATTGGTAAACAATATGGATGATGAGTATGTTACGT
CGATAACTTTATATGTTTTGGCTCATCATTTGCGCAGTTTTCTATGGTGTGGCATATCATATCT
CTGTAAATTCTGATTACTGTATGTCTGTAGCGGCACTTGTGAGCTATGCCTTTTGGGAATAGCA
ATTTATTTTTCATTTTGTGCGGATAGAGGGATCGTTTATCAAACAGATGGTTGGTACGTCCATA
AGTCTGATAGTTAAATTGATCTGCCATATTGTTCCTCAGAAAGTGTATGTTTCTTTCAGTTTAT
GCTATTTGAGGTTTTAAGTAGTACCAGCGGTACTTAAAATCTTTCACATTTATGATTGCAATAT
TACTTTTCTATGTTCTTATGCTCAATTTTTTTCAGGCCGCAGATATATTGTCCAAAGAAGGAAT
CAGTGCTGAGGTGATCACTTGTTAAACAATTTATGTTCAGTATAATAATCTATAATGCATCAAT
CTTTTCAACCACATACTGCAAAAGTTTCCTTATTTTTTACTGCTATTTGCCAATAGGTGATAAA
CCTTCGTTCAATTAGACCACTTGATAGAGCTACTATCAATGCATCTGTTAGAAAAACAAATAGA
TTGGTGACCATTGAGGAAAGCTTCCCACAGCATGGGATTGGTGCTGAGATATGGTACGCTCTCT
CTCCACATGCATTGGCACACCTGTGTGTGGATAAGGACTTTTAGTTCTGACACTCGTTTTCTTT
GCAGCATGTCTGTTGTTGAGGAAAGCTTTGAATATCTTGATGCACCAGTTGAGAGAATTGCTGG
AGCTGATGTACCCATGCCCTATGCTGCCAATCTTGAGAGGATGGCTGTCCCACAG
Conservation Information
Conserved circRNAs osi_circ_008158* osi_circ_018632
PMCS 0.132652056
Functional Information
Coding potential Y
Potential coding position 19754378-19757308(+)
19757097-19754377(+)
19754552-19757050(-)
Potential amino acid sequence MTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIA
VGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQ
CYAAWYAHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALP
IGKAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNR
LVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALN
SALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGL
RPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAH
VPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIER
EGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESF
PQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALNSALDEEMS
ADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMT
FNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLV
PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIEREGKDVTIT
AYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAE
ICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQMTVREALNSALDEEMSADPSVFLM
GEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQAI
DHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLVPYSAEDAR
GLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKIEREGKDVTITAYSKMVGY
ALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEE
SFEYLDAPVERIAGADVPMPYAANLERMAVPQ(+)
MGLVLRYACLLLRKALNILMHQLRELLELMYPCPMLPILRGWLSHR*(+)
MHLDTLPPLHPSEKQKDQQTFLHRVQSSALHGQSSVGQPSSQDWQHRAWVHQLQQFSQLVHQDI
QSFPQQQTCISQHQSHAVGSFPQWSPIYLFF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017