Detail information of Os06g0716700_circ_g.13


General Information
CircRNA Name Os06g0716700_circ_g.13
ID in PlantcircBase osa_circ_032362
Alias NA
Organism Oryza sativa
Position chr6: 30447313-30449590  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os06g0716700
Parent gene annotation Similar to Heat shock protein 90. (Os06t0716700-01);Similar to H
eat shock protein 90. (Os06t0716700-02);Similar to Heat shock pr
otein 90. (Os06t0716700-03)
Parent gene strand -
Alternative splicing Os06g0716700_circ_g.12 Os06g0716700_circ_g.14 Os06g0716700_circ_g.15 Os06g0716700_circ_g.16 Os06g0716700_circ_g.17 Os06g0716700_circ_g.18 Os06g0716700_circ_g.19 Os06g0716700_circ_g.20 Os06g0716700_circ_g.21 Os06g0716700_circ_g.22 Os06g0716700_circ_g.23 Os06g0716700_circ_g.24 Os06g0716700_circ_g.25 Os06g0716700_circ_g.26 Os06g0716700_circ_g.27 Os06g0716700_circ_g.28 Os06g0716700_circ_g.29
Support reads 14
Tissues shoot, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0716700-01:7
Os06t0716700-03:3
Os06t0716700-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGACAGGCCATGGGGAACACCACCAATCTTCTCCTCTACCTTCGGCGGATCAACTAACTCAT
CAGTGCTGTCATCAGCATTGACTTGGAGCTTCTTAGatgattcctcttcttcacttgattcact
tgactcatcctcatcagctggcacttccacatcaacctccttggttgcccacaagtaaatgggg
aaattgat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 861
Transcript exons: 30447313-30447439,30447875-30448013,30448128-30448254,30
448402-30448513,30448605-30448685,30449231-30449384,3044
9470-30449590
ATGATTCCTCTTCTTCACTTGATTCACTTGACTCATCCTCATCAGCTGGCACTTCCACATCAAC
CTCCTTGGTTGCCCACAAGTAAATGGGGAAATTGATGAACTCAGAGTACTTCTTCACCAAATCC
TTTAGCTTGTCTTCTTCCACGTACTCCTTGGCTTCATCTCGGAGGTGCAGTCTTATTTCAGTTC
CACGGCCCAGGGGTTCATTCCATGTATCCTCAGAGATAGCGAATGATCCATCAGCTTTGGACTC
CCAGACATGCTGTTTGTCGTCATTGTGCTTGCTGATCACTTCAACATAGTCAGCAACCAAGTAT
ACTGAATAGAAACCAACACCGAATTGCCCAATGAGATTGAGGTCACCCCCAGTCTGCATCTTTT
CCACAAAAGCTGAAGTTCCAGATTTGGCAATGGTCCCAAGGTTCTTAATGAGATCTTCCTTGGT
CATACCAATACCCCTATCCCGAATGGAGAGAATCTTCTTCTCCTTATCCAGCTTAATCTGGATT
TCAAGCTTAGCAGTGTCACCTTCGCCCAAAACCTCCTTATCAGTGAGAGCCAGGAACCTAATCT
TGTCCAAAGCATCAGAAGCATTGGAGATGAGCTCCCTCAGGAAAATGTCCTTGTTGCTGTAGAG
TGAGTTGATGATGATGTCCATGAGTCTGGACACCTCAGCCTGGAACTCAAATTTCTCCGCTGAG
CTCCTGAGGGTCTTCCTCGAGATTGACTCAGCCTCCCTCTGAACAACCTCAGAGTCCGTGGACA
GGCCATGGGGAACACCACCAATCTTCTCCTCTACCTTCGGCGGATCAACTAACTCATCAGTGCT
GTCATCAGCATTGACTTGGAGCTTCTTAG

Genomic sequence ATGATTCCTCTTCTTCACTTGATTCACTTGACTCATCCTCATCAGCTGGCACTTCCACATCAAC
CTCCTTGGTTGCCCACAAGTAAATGGGGAAATTGATGAACTCAGAGTACTTCTTCACCAAATCC
TGCAAGACCATGAAATGTTCAAGATAGTAAGTTATTTTCTTTGTATAATGTCTCAATAGCAGCT
ATTCAACAGAAATTTGCCAGACTATGCAGCAAAATGAATTTACAAAAAGGTAATGCTAAACTTC
CTTGTAAGCAATGACATTCAGGGCTAATGAAAAGGTCTCTTGTCCCTACTAGTTATACAGACTA
GGTTTCAACCAAAGGCAGCAATTCATGCTAAAAAAGCTGTTGAACAACCCTAACCATAAGCCAT
ATATGCAAACAAGCGAAATGACAATTCCTATCCGAAGCTTGCAGCAAAGCTACATCCACATTCC
GAGGTGACAAGCATAAAGCACAGAGACAATGCAGACACCAAGTACCACTATCATGTGCATATCG
CATATTTGATGTCACAGCATGAAGCCAATTGACAGTAATGATGGTAATACCTTTAGCTTGTCTT
CTTCCACGTACTCCTTGGCTTCATCTCGGAGGTGCAGTCTTATTTCAGTTCCACGGCCCAGGGG
TTCATTCCATGTATCCTCAGAGATAGCGAATGATCCATCAGCTTTGGACTCCCAGACATGCCTA
TCAGAGAAAAAGTGCAACAGCAGAACATGAAGTAGGTTGTCATGCCAGTGAAGGAAAAGAAGAT
GAACCAAAAACACAATATGTAGCCGCTGTATTTCAGTGGTGTCTTACTGTTTGTCGTCATTGTG
CTTGCTGATCACTTCAACATAGTCAGCAACCAAGTATACTGAATAGAAACCAACACCGAATTGC
CCAATGAGATTGAGGTCACCCCCAGTCTGCATCTTTTCCACAAAAGCTGCAAAAATTTCAAGGA
ATTGGTATCACTCAAGTTTAAGTTAAATGGCACTTGGTAAAATTCTCTTTACAAACAAATAGAT
AATACTAAAGTTTTAGCAAGAGAATACACATAACTTTAAGAGAAATCAGTACAAAGGAGTAATA
CCTGAAGTTCCAGATTTGGCAATGGTCCCAAGGTTCTTAATGAGATCTTCCTTGGTCATACCAA
TACCCCTATCCCGAATGGAGAGAATCTTCTTCTCCTTATCCAGCTTAATCTACACGTGCCCACA
GCAGATGCCATGAAGTCAATTTCCAAAACAAGATATACCACACAAAAAAGACTATCAGCTACGA
AGTTTAATATACCTGGATTTCAAGCTTAGCAGTGTCACCTTCGCCCAAAACCTCCTTATCAGTG
AGAGCCAGGAACCTAATCTTGTCCAAAGCCTACACATAAAAAAAAAGCACACATTAAATTCCTA
GCATCTACTAATAACCTTAAGGGCTCATTTGGATTGGAGGCTTTTCCCGGGAATTTCATAGGAA
TACTGTTCACATGGGATTTTTTCCTATCCTATCGTTCGGATCATAAAAAGTGGTTATGGGAAAA
CTGTAGGAAAAAATCCTTTGCTGCTGATTCCACAGGAAAAACGGAGGAAAATTCCATCCACTCC
AATCTCTTGTTTCATTCCCTTTGACAGAATCAAGCCAATCAAGCAATAAAACAGCCACTAGATA
ATAAGCAAGACAGACGGGATAAGCAAGATAGCGGTAGATAATAAATACAGTATACAGATTACTC
CTCGATTACTTTTTATTTCCTTTCCTGTAAACCGAATGCTCTCAACTTTTATATTCCTGCGTTT
TTCAATCCTATGTTTTCAACGTGATTTCCTTTCATATTCCTACGTTTTTCCTATCCTGTGTTTT
TCCTTTTCCTGTGTTCTGAATAGGCCCTAAAAAGGGAGTCAAAATGCAATACAACTACATACAT
CAGAAGCATTGGAGATGAGCTCCCTCAGGAAAATGTCCTTGTTGCTGTAGAGTGAGTTGATGAT
GATGTCCATGAGTCTGGACACCTCAGCCTGGAACTCAAATTTCTCCGCTGAGCTCCTGAGGGTC
TTCCTCGAGATTGACTCAGCCTCCCTGCACACATTCCATATTGCTCATACAGATATCAACAACA
CAATAAGATGGAAACGATCAGCATTGATCAGAAGATCGTGCACACCTCTGAACAACCTCAGAGT
CCGTGGACAGGCCATGGGGAACACCACCAATCTTCTCCTCTACCTTCGGCGGATCAACTAACTC
ATCAGTGCTGTCATCAGCATTGACTTGGAGCTTCTTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.248613832
Functional Information
Coding potential Y
Potential coding position 30447374-30449548(-)
30449307-30447315(-)
Potential amino acid sequence MWKCQLMRMSQVNQVKKRNHLRSSKSMLMTALMS*(-)
MDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVLGEGDTAKLEIQIKLDKEKKILSI
RDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTGGDLNLIGQFGVGFYSVYLVADYVEVISKHN
DDKQHVWESKADGSFAISEDTWNEPLGRGTEIRLHLRDEAKEYVEEDKLKDLVKKYSEFINFPI
YLWATKEVDVEVPADEDESSESSEEEESSKKLQVNADDSTDELVDPPKVEEKIGGVPHGLSTDS
EVVQREAESISRKTLRSSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFL
ALTDKEVLGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT
GGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKADGSFAISEDTWNEPLGRGTEIR
LHLRDEAKEYVEEDKLKDLVKKYSEFINFPIYLWATKEVDVEVPADEDESSESSEEEESSKKLQ
VNADDSTDELVDPPKVEEKIGGVPHGLSTDSEVVQREAESISRKTLRSSAEKFEFQAEVSRLMD
IIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVLGEGDTAKLEIQIKLDKEKKILSIRD
RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTGGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD
KQHVWESKADGSFAISEDTWNEPLGRGTEIRLHLRDEAKEYVEEDKLKDLVKKYSEFINFPIYL
WATKEVDVEVPADEDESSESSEEEESSKKLQVNADDSTDELVDPPKVEEKIGGVPHGLSTDSEV
VQREAESISRKTLRSSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLAL
TDKEVLGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTGG
DLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKADGSFAISEDTWNEPLGRGTEIRLH
LRDEAKEYVEEDKLKDLVKKYSEFINFPIYLWATKEVDVEVPADEDESSESSEEEES(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017