Detail information of AT2G04842_circ_g.2


General Information
CircRNA Name AT2G04842_circ_g.2
ID in PlantcircBase ath_circ_012813
Alias At_ciR3004
Organism Arabidpsis thaliana
Position chr2: 1699083-1699391  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder, find_circ
Parent gene AT2G04842
Parent gene annotation Threonine--tRNA ligase, chloroplastic/mitochondrial 2
Parent gene strand -
Alternative splicing AT2G04842_circ_g.3 AT2G04842_circ_g.4
Support reads 2/36
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04842.1:1
AT2G04842.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTGAATCCAAACCTCGACAATATCTCTTCTGTGAGATCTAGAACACCTCTGATCTCATCTTT
GATCTGATCCTCTAAACAAAATATGTGTGCATCGTCctgaatagttgagcactgccattttcta
cccaatgcatcttcaatcttaaggtcgatctttgggccgtaaaaggcgccacctccttcgtcaa
cctcatag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 309
Transcript exons: 1699083-1699391
CTGAATAGTTGAGCACTGCCATTTTCTACCCAATGCATCTTCAATCTTAAGGTCGATCTTTGGG
CCGTAAAAGGCGCCACCTCCTTCGTCAACCTCATAGCTCCATCCCTTATCATCTAAAGCATCTC
TAAGGGCACAGGTCGCCTTCTCCCATATATCATCACCTCCAACTGATTTTTCAGGTCTAGTTGA
TAAGTTAACCTCATACTTGTTGAATCCAAACCTCGACAATATCTCTTCTGTGAGATCTAGAACA
CCTCTGATCTCATCTTTGATCTGATCCTCTAAACAAAATATGTGTGCATCGTC

Genomic sequence CTGAATAGTTGAGCACTGCCATTTTCTACCCAATGCATCTTCAATCTTAAGGTCGATCTTTGGG
CCGTAAAAGGCGCCACCTCCTTCGTCAACCTCATAGCTCCATCCCTTATCATCTAAAGCATCTC
TAAGGGCACAGGTCGCCTTCTCCCATATATCATCACCTCCAACTGATTTTTCAGGTCTAGTTGA
TAAGTTAACCTCATACTTGTTGAATCCAAACCTCGACAATATCTCTTCTGTGAGATCTAGAACA
CCTCTGATCTCATCTTTGATCTGATCCTCTAAACAAAATATGTGTGCATCGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.28559119
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017