Detail information of AT2G04842_circ_g.4


General Information
CircRNA Name AT2G04842_circ_g.4
ID in PlantcircBase ath_circ_012815
Alias At_ciR2802
Organism Arabidpsis thaliana
Position chr2: 1699176-1699283  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G04842
Parent gene annotation Threonine--tRNA ligase, chloroplastic/mitochondrial 2
Parent gene strand -
Alternative splicing AT2G04842_circ_g.2 AT2G04842_circ_g.3
Support reads 3
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G04842.2:1
AT2G04842.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCCATATATCATCACCTCCAACTGATTTTTCAGGTCTAGTTGATAAGTTAACctcatagctc
catcccttatcatctaaagcatctctaagggcacaggtcgcctt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 108
Transcript exons: 1699176-1699283
CTCATAGCTCCATCCCTTATCATCTAAAGCATCTCTAAGGGCACAGGTCGCCTTCTCCCATATA
TCATCACCTCCAACTGATTTTTCAGGTCTAGTTGATAAGTTAAC

Genomic sequence CTCATAGCTCCATCCCTTATCATCTAAAGCATCTCTAAGGGCACAGGTCGCCTTCTCCCATATA
TCATCACCTCCAACTGATTTTTCAGGTCTAGTTGATAAGTTAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.229374019
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015