Detail information of Os06g0474900_circ_g.3


General Information
CircRNA Name Os06g0474900_circ_g.3
ID in PlantcircBase osa_circ_030847
Alias NA
Organism Oryza sativa
Position chr6: 15924652-15929138  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os06g0474900
Parent gene annotation Conserved hypothetical protein. (Os06t0474900-01);Conserved hypo
thetical protein. (Os06t0474900-02)
Parent gene strand -
Alternative splicing Os06g0474900_circ_g.2 Os06g0474900_circ_g.4 Os06g0474900_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0474900-02:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACTCTTACATTGTCCAATGGATGAATTCCCACTTTTTTTGGAGAACCCAAAGCTCATGCAAT
GTCGAAGAGACTCTGGACTCATACCACCTCCATCATcaatactccagtgtcatttctttcaacc
gtgtctcaagtctatggaaaagtcccgtcttctcaaaatcttgtttatcatgagtaggtcttat
gaagtttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATACTCCAGTGTCATTTCTTTCAACCGTGTCTCAAGTCTATGGAAAAGTCCCGTCTTCTCAA
AATCTTGTTTATCATGAGTAGGTCTTATGAAGTTTGCCTCCAAAACCCCTAGCATACAGTATTT
TGTTCAGAACAGAAATCATGCCACTAAAAGAAATATTACCAGGAAACCAAGTCAAAACTGCATT
AGAAACACTTACCAGCAATGCCTTTGCTGTGACTTTTATCAGGGTGAGCACACCAAAAGGGCTG
AACAAAGAGAAGACGGAATGCCATCATAATGGAGCTCAAAATTGTAAATTATGAATTCAGAGGC
CAAGAGTGTTCTCAGTACGGTTGTATCATCTTGATGTAATTGACTGAGTTCAATAAGACTTCCA
TTATCCAAAAAAAAAAAGGAGAAAAAAACAAAAGCACTTGAAACCAAAAAGAAATCACCAAAGC
CCTTATCCGTATTTACTAAAAAAACAGAATAACTAATTGGAAATACAGATCAGTGAAGATCCAT
TTGTAATTTTCCTGATTCTAATTCTCCCCTCTTAACAAGTTCTAAATTAACCCCTATTACTGAT
TTGGAGTTTACAGCTCAGCCACTGCATTACCATACAAATTTTCTTGTTTGTGAAATAACTTATG
GAAACAAATTGCATACAGCAATATCAATGAATTTTACCAGTATAAGGCGGTTCTTGTGGTAGAC
ATTAAATCCATGTATATCCAGTTTTGGAGCACCTCTTAAGTAGCCAATTGTAGTAATAACGTCA
ACCTGAATAAATGAAATGAAAATGTATTAGGTAAAAGGGAATCATGTTGCAATATAGAGTTAGT
TGTCTCTGCAAAATTATCACTGTTATTAGGTGAAATGTAAATGTAAATAATATCTTAGTAGTAG
TAGATCTGCATCTGGAATCAGGTTTTAAACAAAGTTGGTTAGAACAAACCTCTATGTTTATTCC
AACTTGTGGTCGATATTTGATGCATTCACAGTATATGAGATCATTGACAATGTGATGTGGCTCA
ACAACTTGTCCACACAGGATAACTTTGAAGTGTTTTGGTAGCTGAAGATATAGTATAGATGCAT
AAACCTGGAAATGTTGAGCTAGTAAGCCATTGCAAACATACCACAGGTCTACATGTATGTTGTA
AAACCATATTTTCTGCTTGAAACTTACACGAAGTGAATATCGAAAGCGATTTGCGACATGCATA
TGATTTAGCCTTCCTACTGTCTTCTTTCCATCTGGCATGGCAGGTGCTCCTGAGATCATAATAT
CCTGCACAACCATGCAGCAGAGTTCTTTAGCGAAAATTCTGTGCATATCTCAGATAAAGATATA
AAATAGAACATTAGAGATTGCAAAAGGGCACTAGTCAATTCCCATCTTGAATGAAACAAGATCC
AGGGCTCCTAGTGGCCACTGTAGTCCATAAGCATACAGTTACAGACATCCAACGATTCTAAATT
TAATAACCCACTTTGTTTGGAAGAGGGAAGTCCTCCGCAGTGCATCAGGGCTCTGATAACAATC
CGGCCCAGGTGGGGTTGGCCGAGGCCCAATAACTTAAGGTTGCCCGGACCCTAACAGTTCATAG
GCACACCCACTCGGGGTAAGGCCCAATCTCCCTAAAAGACTAGTCCAATAGGGGAAGGGTGGCT
CTCCCTTTTAAGGTGGCTTCCTCCTCCCAAGCTAAGCAAGGTGAGATTATTCAGAGGCTCACAC
GGTTGCCGCCCGACTTTAGCGTCTCTGCCAGCGGGTAATAGTGGAGGATGTCCTCATCATTCCC
ACCCCTTTAAACAAGGGCCCAGCTCTGATACCAAATGATAATAATCCGGCCCAGGTGGGGTTGG
CCGAGGCCCAATAACTTAAGGTTGCCCGGACCCCAACAGTTCATAGGCACACCCATTTGGGGAA
AGGCCCAATCTCCCTAAAAGACTAGTCCAATAGGGGAAGGGTGGCTCTCCCTTTTAAGGTGGCT
TCCTCCTCCCAAGCTAAGCAAGATGGGATTATTCAGAGGCTCACACGGTCGCCGCCCGACTTTA
GCGTCTCTGCTAGCGAGTAATAGTGGAGGATGTCCTCATCAGGCTCCAAAGGTGGTACAAGTAA
AAGATAAAAAATGGACATGTACATCTAGATCATAATATTTCTATATCTTCCCTCAATGGAAAGT
AAATGATTTCAGTACATAAGATGATATCAGTTACTCAACGCGTGCAAACATAACTGTATACTAC
TGCCAAAAAATATATAAACAAATGTAAGCAAATAAGTAAATTTTTTTAGCATAAGTAATCTAAC
CATCTCAGGAAGAATGCTTTTTGGTGCTTTTGAGGGTGAGGAGGTGAGAGCATGATTGGCATCC
CTTACCACCCACTCTGGATAATATAGTAGACAGTGACATATGAGTGCTATCTCTCCAAAAGACC
CCTCTTACATATTTTTATCCTATCCCTTAGCACCATGTTAGGTGATATATGTTCTAAAAATTTG
GAAATTCTATATTTTAAATGAATAATATATAAAATGATATGGATAGATTTTCCTTGCTAAAAAC
AAAAAAATATTGCTTAGGACCAGGTGCCAAGATTAGCAAGAGATGCCAACCATTTTAGCTAAAG
AACCAACTTACACACCCCTCAGCACCTATAATAACAACATTATCTCTCCTCTAGCATCTTTCTA
GAGCCTATGTACATTCTCTGATGCACAGATTCATTCCATTCTCCCAACTAAACAAGTGGTTAGG
TTTAAAATTAGAATTAGATGTTGTATTCACTGATTCACCAGTTCACTCAAACCAAACAGCTTGA
AAGTCAAGTTTTATAATACTTCACAGAGTATTGCACAAACTAAATACAATGAACATTTACATTT
CTGGGATAAGGAAAAAGTAAATAGTAAGTCAAGTTCCATTTACATTTACATTTACCTCTTCATC
AGATGCAAAGTCAAGTTCCATTTCCCATGCATCGTTGAACCACAAGTTGAACACAATTAGTTTG
GTACCATGGCATCCCATGTCTCCAAACTGAAAGAAAATGTATGAGTATGTGAAAATCTTGAACA
GCCTGCTGTCTAAATATGAAAAAAGATATATACCATGAGCAATTGCACATCGAGACAAAGTCTA
GATATTCGCCAATAACAATAACAATAACAATAAATCTTTGTGTTACACCTACCAGTCAGGAACA
TATATTCTTTTTGACATTAAAATGGCCCCAATCATGTTACTTTGACCACTGATTTACATTGTAA
TATACTTTTAGAATTTCATAAAATTGTAATATTATTAAAGTATTTTTCTGGCAAATTTATGCAT
ATGGATTTTATGTATCCAGTCATAATAAAGAATATTGATGCTCAAAGTTTAGAAAATTTAACTT
TACATATGTTCAAAACATGTTTCCACACGTAGGGGGAGTATAAAGTAGTTATGCTATCATTGAA
GAACTAACTATTACTTGTATTTGGTGTATCTGCATATTTGATTCTTAGGATACCGTGACCCAAT
AAAATCATTTGCAACATATATTTACAAAATGTATTATGGTAGATATAAAGAAACAAAGATAAAT
AGAGAAACTTACTTGATTCAATAAATCATCTTCTGTAGTAAATGGAGACCACTTCAAAAGAGTG
GACAAATTGGAAGAAAAATGTTTCTCACCACGGTCCATTATCTTCTTGAGAGTATGAGATGATT
CATCAAATTCATAATCAACCTACAAAGAAAATAACAGAAAGTTTCTCTAGTTGATTATAAAATT
AGTGTCATGTACAGACCAAAATTGAAGAGCCATATGCACGTAACTAGTTTGCTGAAAACTTTTA
CTACTAGCTAACTTCTGCATTGAAACAAAGTTAAGTTGATATAGGTTATGTAGCTAACAAGTTA
ATGGACTGACCACTGGTACTAATATGTCATTGCAGCCAGTTTTTGTAAGGAATGTATAAGAGAG
TAGACCAATACTCCGTGTCAATCTCCTGTCAAAACATTAACATAAACAGAGTTAGCTCAATAAA
TCAGAGAGAACTGAAAGCAACATTTAATATAATTAATATTTTGCTTCAATGATTAACATCATGT
GGTGATTTTCAGGGTCAGTAAGAACCAAAGAGGTTGAGGAATTGACGCTAAATATGTTGATGAA
ACAGTATTACTCTGCATTGACTTTTCTTATCTGAATATAAATATTATAAGAAGATAATGTAATG
TTAAATTAGGAAGAACCTATTATCTTGTGTGCAGCTGAATACAATAACATCTGCTCCAAGTCTC
ATTGTGCTGGTTTTGAACCCATTTCCATCTAGTAGTGGTGAACTTGCAAATCAGGTTCTGAAGT
ATTAAGCAATAGACAGGGGCCAAAGGCACTGTTCAGAACTCTTACATTGTCCAATGGATGAATT
CCCACTTTTTTTGGAGAACCCAAAGCTCATGCAATGTCGAAGAGACTCTGGACTCATACCACCT
CCATCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.219129911
Functional Information
Coding potential Y
Potential coding position 15929058-15925391(+)
15929062-15924729(+)
15929102-15924733(+)
Potential amino acid sequence MDEFPLFLENPKLMQCRRDSGLIPPPSSILQCHFFQPCLKSMEKSRLLKILFIMSRSYEVCLQN
PSNAFAVTFIRVSTPKGQYKAVLVVDIKSMYIQFWSTS*(+)
MNSHFFWRTQSSCNVEETLDSYHLHHQYSSVISFNRVSSLWKSPVFSKSCLS*(+)
MSKRLWTHTTSIINTPVSFLSTVSQVYGKVPSSQNLVYHE*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017