Detail information of BGIOSGA016133_circ_g.2


General Information
CircRNA Name BGIOSGA016133_circ_g.2
ID in PlantcircBase osi_circ_014231
Alias Chr11:30928518_30929911(MH63RS2), Chr11:30928518_30929911(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 12822863-12823687  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA016133
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016133_circ_g.1 BGIOSGA016133_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   TC-GA
Number of exons covered BGIOSGA016133-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACGTGTTTTAGGGACATCCTCTCGCTTCTTGTATGCATATCACCTATTAATCATCCAAACTTT
TTAAAAATAATTGATGGGATAAATTAATATAAAACTccatatccatgctgccatggaggtataa
gtctcagcgcgacctcgccaccgagatcaagcgcataaaagaagaggttgacgaggtgggaaat
cgtcgaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATATCCATGCTGCCATGGAGGTATAAGTCTCAGCGCGACCTCGCCACCGAGATCAAGCGCAT
AAAAGAAGAGGTTGACGAGGTGGGAAATCGTCGAGAGAGGTATAAACTTGACAGTATTATTGTG
GCCACAGCCCCGTCTGATCCCCGCTTGCTAGCACTGTACGAAGATAAAGCAAAGCTCGTTGGAA
TTGATCACTCCACGGAAGAGATCATCAAGTTGCTATCCATGGAACGTGAAGGTGATGGTACATC
GGAGCAGAAGCTCAAGTTGGTCTCGATCGTTGGCCCTGGTGGAATGGGGAAAACCACCCTTGCC
AATGCTGTGTATCAAAAGCTTGAAGAAAAATTCGATTGCACAGCTTTTGTTTCGGTTTCTCTTC
AGCCTGATGTCAAGAATATCCTCAGCGGCTTGCTTCGTCAAGTCACGGCCAGCAAAGTCAAAGA
TGACTTGGAGGAGGGCAAGGACAAGGATAAGAAGAGGTACATCAGTTAGATTCTTTGTAAAATC
TCCCCCTCCTAGTAAATCACCAACAAAATCGCTGAATACACTCAATACTAATTGCAGCCTACAT
CGTCGAGAAAGCCAAAAACATGATGGAAACACAGAAACGTGGTCCGAAAAGGAGCTCATCGACA
AAATCAGACATGTCCTTGAGAAAAGAAGGTACGTCAATTACTGTTGCTATCTTATTATAACAAA
GCTATAGTTAATTCATAAGGGAACGTGTTTTAGGGACATCCTCTCGCTTCTTGTATGCATATCA
CCTATTAATCATCCAAACTTTTTAAAAATAATTGATGGGATAAATTAATATAAAACT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021