Detail information of BGIOSGA016133_circ_g.1


General Information
CircRNA Name BGIOSGA016133_circ_g.1
ID in PlantcircBase osi_circ_014230
Alias Chr11:30928775_30929266(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 12822863-12823187  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016133
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016133_circ_g.2 BGIOSGA016133_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   TG-GA
Number of exons covered BGIOSGA016133-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCCATGGAACGTGAAGGTGATGGTACATCGGAGCAGAAGCTCAAGTTGGTCTCGATCGTTGG
CCCTGGTGGAATGGGGAAAACCACCCTTGCCAATGCccatatccatgctgccatggaggtataa
gtctcagcgcgacctcgccaccgagatcaagcgcataaaagaagaggttgacgaggtgggaaat
cgtcgaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATATCCATGCTGCCATGGAGGTATAAGTCTCAGCGCGACCTCGCCACCGAGATCAAGCGCAT
AAAAGAAGAGGTTGACGAGGTGGGAAATCGTCGAGAGAGGTATAAACTTGACAGTATTATTGTG
GCCACAGCCCCGTCTGATCCCCGCTTGCTAGCACTGTACGAAGATAAAGCAAAGCTCGTTGGAA
TTGATCACTCCACGGAAGAGATCATCAAGTTGCTATCCATGGAACGTGAAGGTGATGGTACATC
GGAGCAGAAGCTCAAGTTGGTCTCGATCGTTGGCCCTGGTGGAATGGGGAAAACCACCCTTGCC
AATGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021