Detail information of EPlOSAG00000027594_circ_ig.2


General Information
CircRNA Name EPlOSAG00000027594_circ_ig.2
ID in PlantcircBase osa_circ_022617
Alias Os_ciR55
Organism Oryza sativa
Position chr3: 35161299-35166181  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000027594_circ_ig.1 Os03g0836800_circ_igg.1 Os03g0836800_circ_igg.2
Support reads 1467
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGGAAGATGGAAAGATGCATGCGTGTGGGCACGATGCTCATGTCGCAATGCTGCTGGTAGCT
GCTAAGCTGCTGCAATCACGCAGGGATCATTTCAATgggaaggtgaagctcgtgttccagccgg
cggaggaggggtacgccggcgggtactatgtgctcgaggaaggcgctgtggacgatgtgcaggg
catcttcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 565
Transcript exons: 35161299-35161494,35162063-35162192,35162587-35162794,35
166151-35166181
GGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCG
AGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGC
GGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATC
AACGGGTGTCTGTGACCACCATCAAAGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCAC
TCTGGGCGGCACCTTGAGGAGCATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGA
GAGGTAAGGTGATAGAGGGGCAAGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGA
GGATAAGCTCCCGCCATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCG
GTGGCGGAGAGCATGCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGG
ATTTCGGGTTCTACGCGCAGAGGCTGCTGCAATCACGCAGGGATCATTTCAAT

Genomic sequence GGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCG
AGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGC
GGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATC
AACGGTAAAGGCGGCCACGCGGCGGCGCCCCACCACGCCGTCGATCCGATCGTGGCTGTCTCTT
CCGCCGTCCTCAGCCTCCAGCAGATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTACG
TATGTACGGTACATTAATTAACTCGCTCTTACTACTTTTTACTCCATTCGTCCTAAAATATAAG
GGACCATAACCCTTCTCATGTATATGATTTCTTCATTTCAATAAAAGTTCAGGCTGGTGTCTAA
CACTCGCCGTAGTTTTCCTAAAAAAAATATAAGAGACCCAAAAACCCTTATATTTTACAAGGAA
GGAAATATTATTATAATCCTCTCCTATGTTTCAAAATAGATACTACTTTAGGATTAAAAAATTA
TCAAAAAGTGATCATGCATATAATGCAATAATGAATGATAAACAATTATACTACCTCCGTCCCA
AAATGTAATAACTTTTGGCTATAAATCTGGACACACAGTTATACAGATTTATAACTAAAAATAC
TTATATTTTTTTGACAGATGAGTAACAAACAGTGATAATTGATGGGCCATGCATGCAGGTGGTG
TCTGTGACCACCATCAAAGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCG
GCACCTTGAGGAGCATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTACT
ACCTTCGTCCTAAAATAAATGTAGCCGTGGGAATCCGTGTCCAACGTTTGACCGTTCGTCTTAT
TTGAAAAATTTATGAGAAAATTAAAAAAAGTTAGTCACACATAAAATACTATTCATGTTTTATC
ATCTAATAACAATAAAAATATTAATCGTAAAAAAATTTTCAAATAAGACGAACGGTCAAACGTT
AGACATGAACAGTGCAAAACGGAGGGAGTAGTAAAATTATGCTGATAAATGAGCCAGTATATAT
CTAGTACTAGTACATGCATATAATATAGGAGTTTTTTTTTTTAGAAATTTTATAATATAGGAGT
ATCCTTGTATTTTTTTTTTCTTCTTGGGGAAAACATATTTTTTTTGTTGAACTTACATACTGGA
ATATATGAAGGTGATAGAGGGGCAAGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATG
GAGGATAAGCTCCCGCCATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGG
CGGTGGCGGAGAGCATGCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGA
GGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGAT
GGCGGCGGGATGGCGGAGACGACGACGAAGAATCAGCTGCACTCGCCGCACTTTGTCGTCGACG
AGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAA
CGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGG
TAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCC
CAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAA
TAAATTCCCGGATTGTTTTCTTTTACTTCGTCTGCCATGGCCTCATGGGTACGACGAGCGAAAC
CAGCCGCTCCATTTTCCAAACTAGTCTCACTACATTACTTCTCGAGACTATACATATTCTCCTC
GTTGGCAAACACACAGGATAGGGAAAAAAAAGTAGAGTAGGCGAAATTATAGATGGCCAAAAGG
TCCAAGGCCCAACGGTTCGGTCCACGGCACGGTATTTTGACTCGGCCCAAGCACGACACGGCCC
GACGAGGGTCAGGCCTATGCCGGCCTGGCCCGACCACCGGGCCATGCCTGGGCTCCTCCACCAG
CACGTTGGGCCAGCCTGGCACGATGGGCTACAGGCTAGGCCCGACACACAAACAATAGGGAGTA
ACAATAGATATATTATATGCCACGATCGAAAGAATAGAGATATAAAATAGACTTATTTAGTTAT
ATATATGTCAGTCTAAAGAGAAGGGAAGAAAAATAGACTTATTTTAACTATATATGTCACAGCT
CAAAGAGGAGGGAGAAAAAATAGACTTATTTATTTAAAAATAGGCACGATAGGCCACCCGTGCC
TTCGGGCCGGCCCAACTACTGGTGGGCCGTGCCTGGGCCAAAGGTGCAGTCTATGGGCCAGCAC
GGCCTGGCACGAAGTACGGCCCGATGGCTGGTAGACCGTACCTGGGCTGGGTCATGCCGTACGG
GCCTTTTGGCCATCTATAGACGAAATGCAAGGTTTCTGCCTTTCTGGTATTTGGAGCAAAACTT
TTTCTGCTCCGAGAATACTGCTCAAAACTAGTTGACAGTTGGACCTAAACTATGCTAACCTCTT
GTATGTCAAATGCACGTATGTTAGTCTACAGGCTTTGAAAAAAAATGGCCCTACCTAAAACACA
ATTACACAAACTAAAGCCTGTGGTAGTGATACAGTATCCTCAAGTAACGGTTCAAACATTTGAT
GTGATATTTTTGGCTAAATTTTTTTAAATCTAAACACACCCATAAACAAGCTAGCATTTTCTGA
CAAACAAGTTTAAGCCAGCACTCTAAGGCTGTGTTTAGTTTGTGGTCCAAAATTTTTTTAAGTA
TACGGACATACATTTGAAGTATTAAATGTAGACTAATAACAAAACAAATTATAGATTCCACCTA
TAAATTGCGAGACGAATCTATAATTCTAATTAATATGTCATTAGCAAATGTTTACTGTACCACC
ATATTGTCAAATCATGGCGTAATTAGGCTCAAAAGATTCGTCTCACGATTTACATGCAAACTGT
GCAATTTATTTTTTTTTGTCCACATTTAATACTCTATGCATGTGTCCAAACATTTAATGTGACG
AAAAAATTACAACTTTAAAGAAAAATGTTTGAATCTAAACACGGCCTAATTTCTCGGCCATCGC
GTACTCATATATAAATCGTACGTACTCAAGCTGTTGGGCAGATCATCAGTTCACTGGTTAGCTA
GCGCGCGCGCGGCGCCAGGCAGTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGT
TCCAGCACGAGCAGCGATGTCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCG
GAGTTTGCGGGGTGGCTGCGCGGCCTGCGCCGCCGCATCCACCAGCACCCGGAGCTCGCGTTCC
AGGAGCACCGCACCAGCGCGCTCGTGCGCGCGGAGCTGGACGCGCTCGGCGTCGCGTACGTGTG
GCCCATCGCGCAAACCGGCGTCGTCGCCACCGTCGCCGGCGCTGCCGGCCCTGGCCCCGTGTTC
GCGCTCCGCGCCGACATGGACGCGCTCCCCATCCAGGTCAATTAATGCGCTAGCTCTAGCACCA
TTATATCTTATGTAAATCGTACCTCTAAATTGTTTTATTAAGGTTCAAGAAGAAAGAATATGAT
ACCTCTTACTAAATGGTGTATAGGTAATAGTAGAAGGTACTAAATGGTGTATAGGTAATAGTAG
AAGGATACTTGATGGTAAAATATAGAGAAATTTAAATGATACTCCCTCCGTTTCACAATGTAAG
ACTTTCTAGTATTGCCCACATATATATAGATGTTAATGAATACAAACACATACATATGTCTAGA
ATCATTAGCATCTAAATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGAAGT
AGGTGATTAGTGTGAGTATTACTATTCTTTTGTGACAATTATTTTAGGATAAATTTAAATATTA
AAAATACAATTATTATATATGGGATATATATAGTATTATTATACTACACTGTACGAGAGCTACC
ACATTATTCGAAGATCATAGTGGACCAAATTATAACGATGTAATTTAATTGCAATAGTTGTACA
TATATACAATCATGTACTCCATCCGTCCCAAAATAAGTGCAGCCATGGTTTTCCGCACTCAACT
TTGACAACTCGTCTTATTTAAAAAAAATTTAAAAAAAAAATAAAAACATAATTCATGAGTAAAG
TAGTATTCATGTTTTATCATCTTATAACTACAAAATTGCTAATTATAAAAAAAATCAAATAAGA
CGGATGATCAAAGTTAGGCGCTGAAACTCATGGCTGCACTTATTTTGGGACGGAGGTAGTATAT
AGAAAAAGAAGATAATATTTGTATATTAAATTTAATCATACTTTAATGCATATTATTATTATTA
TTATTATTATTATTATTATTTAACAAATGTAATTAAATTTATTAGTTCTCAATCAATCAATAGA
AAATTAGCCACGCTGGTCTCACCCGGCCTTTTTTTATTATTTTTTTCGTGATACCAACCTATTT
TTTTAAAAAAAAAATCGTGATGTTGCTAGGCTAGCTAGCTACCTGTGAATTATGATGGCTAAGT
TTATTGGCATTTAATTGGCAGGAAATGGTAGAATGGGAATTCAAGAGCTTGGAAGATGGAAAGA
TGCATGCGTGTGGGCACGATGCTCATGTCGCAATGCTGCTGGTAGCTGCTAAGCTGCTGCAATC
ACGCAGGGATCATTTCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.544697525
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015