Detail information of Os03g0836800_circ_igg.1


General Information
CircRNA Name Os03g0836800_circ_igg.1
ID in PlantcircBase osa_circ_022618
Alias Os_ciR2182
Organism Oryza sativa
Position chr3: 35162020-35166833  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000027594_circ_ig.1 EPlOSAG00000027594_circ_ig.2 Os03g0836800_circ_igg.2
Support reads 6
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGCCCCACCTCGCCGTTGATCCCATCGTGGCTGCCTCTTCCGCCGTCCTCAGCCTCCAGCAG
ATTGTTGCTCGCGAGACCAATCCACTCCAAGGCGCGatgagtaacaaacagtgataattgatgg
gccatgcatgcaggtggtgtctgtgaccaccatcaaaggaggtgaagctttcaatgtcattccg
gaatctgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGAGTAACAAACAGTGATAATTGATGGGCCATGCATGCAGGTGGTGTCTGTGACCACCATCAA
AGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAGCATG
ACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTACTACCTTCGTCCTAAAATA
AATGTAGCCGTGGGAATCCGTGTCCAACGTTTGACCGTTCGTCTTATTTGAAAAATTTATGAGA
AAATTAAAAAAAGTTAGTCACACATAAAATACTATTCATGTTTTATCATCTAATAACAATAAAA
ATATTAATCGTAAAAAAATTTTCAAATAAGACGAACGGTCAAACGTTAGACATGAACAGTGCAA
AACGGAGGGAGTAGTAAAATTATGCTGATAAATGAGCCAGTATATATCTAGTACTAGTACATGC
ATATAATATAGGAGTTTTTTTTTTTAGAAATTTTATAATATAGGAGTATCCTTGTATTTTTTTT
TTCTTCTTGGGGAAAACATATTTTTTTTGTTGAACTTACATACTGGAATATATGAAGGTGATAG
AGGGGCAAGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCC
ATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCATG
CTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTTCTACG
CGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGA
GACGACGACGAAGAATCAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTC
GGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAG
CCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAG
ACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTAC
AAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTT
TTCTTTTACTTCGTCTGCCATGGCCTCATGGGTACGACGAGCGAAACCAGCCGCTCCATTTTCC
AAACTAGTCTCACTACATTACTTCTCGAGACTATACATATTCTCCTCGTTGGCAAACACACAGG
ATAGGGAAAAAAAAGTAGAGTAGGCGAAATTATAGATGGCCAAAAGGTCCAAGGCCCAACGGTT
CGGTCCACGGCACGGTATTTTGACTCGGCCCAAGCACGACACGGCCCGACGAGGGTCAGGCCTA
TGCCGGCCTGGCCCGACCACCGGGCCATGCCTGGGCTCCTCCACCAGCACGTTGGGCCAGCCTG
GCACGATGGGCTACAGGCTAGGCCCGACACACAAACAATAGGGAGTAACAATAGATATATTATA
TGCCACGATCGAAAGAATAGAGATATAAAATAGACTTATTTAGTTATATATATGTCAGTCTAAA
GAGAAGGGAAGAAAAATAGACTTATTTTAACTATATATGTCACAGCTCAAAGAGGAGGGAGAAA
AAATAGACTTATTTATTTAAAAATAGGCACGATAGGCCACCCGTGCCTTCGGGCCGGCCCAACT
ACTGGTGGGCCGTGCCTGGGCCAAAGGTGCAGTCTATGGGCCAGCACGGCCTGGCACGAAGTAC
GGCCCGATGGCTGGTAGACCGTACCTGGGCTGGGTCATGCCGTACGGGCCTTTTGGCCATCTAT
AGACGAAATGCAAGGTTTCTGCCTTTCTGGTATTTGGAGCAAAACTTTTTCTGCTCCGAGAATA
CTGCTCAAAACTAGTTGACAGTTGGACCTAAACTATGCTAACCTCTTGTATGTCAAATGCACGT
ATGTTAGTCTACAGGCTTTGAAAAAAAATGGCCCTACCTAAAACACAATTACACAAACTAAAGC
CTGTGGTAGTGATACAGTATCCTCAAGTAACGGTTCAAACATTTGATGTGATATTTTTGGCTAA
ATTTTTTTAAATCTAAACACACCCATAAACAAGCTAGCATTTTCTGACAAACAAGTTTAAGCCA
GCACTCTAAGGCTGTGTTTAGTTTGTGGTCCAAAATTTTTTTAAGTATACGGACATACATTTGA
AGTATTAAATGTAGACTAATAACAAAACAAATTATAGATTCCACCTATAAATTGCGAGACGAAT
CTATAATTCTAATTAATATGTCATTAGCAAATGTTTACTGTACCACCATATTGTCAAATCATGG
CGTAATTAGGCTCAAAAGATTCGTCTCACGATTTACATGCAAACTGTGCAATTTATTTTTTTTT
GTCCACATTTAATACTCTATGCATGTGTCCAAACATTTAATGTGACGAAAAAATTACAACTTTA
AAGAAAAATGTTTGAATCTAAACACGGCCTAATTTCTCGGCCATCGCGTACTCATATATAAATC
GTACGTACTCAAGCTGTTGGGCAGATCATCAGTTCACTGGTTAGCTAGCGCGCGCGCGGCGCCA
GGCAGTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGTTCCAGCACGAGCAGCGA
TGTCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCGGAGTTTGCGGGGTGGCT
GCGCGGCCTGCGCCGCCGCATCCACCAGCACCCGGAGCTCGCGTTCCAGGAGCACCGCACCAGC
GCGCTCGTGCGCGCGGAGCTGGACGCGCTCGGCGTCGCGTACGTGTGGCCCATCGCGCAAACCG
GCGTCGTCGCCACCGTCGCCGGCGCTGCCGGCCCTGGCCCCGTGTTCGCGCTCCGCGCCGACAT
GGACGCGCTCCCCATCCAGGTCAATTAATGCGCTAGCTCTAGCACCATTATATCTTATGTAAAT
CGTACCTCTAAATTGTTTTATTAAGGTTCAAGAAGAAAGAATATGATACCTCTTACTAAATGGT
GTATAGGTAATAGTAGAAGGTACTAAATGGTGTATAGGTAATAGTAGAAGGATACTTGATGGTA
AAATATAGAGAAATTTAAATGATACTCCCTCCGTTTCACAATGTAAGACTTTCTAGTATTGCCC
ACATATATATAGATGTTAATGAATACAAACACATACATATGTCTAGAATCATTAGCATCTAAAT
GAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGAAGTAGGTGATTAGTGTGAGT
ATTACTATTCTTTTGTGACAATTATTTTAGGATAAATTTAAATATTAAAAATACAATTATTATA
TATGGGATATATATAGTATTATTATACTACACTGTACGAGAGCTACCACATTATTCGAAGATCA
TAGTGGACCAAATTATAACGATGTAATTTAATTGCAATAGTTGTACATATATACAATCATGTAC
TCCATCCGTCCCAAAATAAGTGCAGCCATGGTTTTCCGCACTCAACTTTGACAACTCGTCTTAT
TTAAAAAAAATTTAAAAAAAAAATAAAAACATAATTCATGAGTAAAGTAGTATTCATGTTTTAT
CATCTTATAACTACAAAATTGCTAATTATAAAAAAAATCAAATAAGACGGATGATCAAAGTTAG
GCGCTGAAACTCATGGCTGCACTTATTTTGGGACGGAGGTAGTATATAGAAAAAGAAGATAATA
TTTGTATATTAAATTTAATCATACTTTAATGCATATTATTATTATTATTATTATTATTATTATT
ATTTAACAAATGTAATTAAATTTATTAGTTCTCAATCAATCAATAGAAAATTAGCCACGCTGGT
CTCACCCGGCCTTTTTTTATTATTTTTTTCGTGATACCAACCTATTTTTTTAAAAAAAAAATCG
TGATGTTGCTAGGCTAGCTAGCTACCTGTGAATTATGATGGCTAAGTTTATTGGCATTTAATTG
GCAGGAAATGGTAGAATGGGAATTCAAGAGCTTGGAAGATGGAAAGATGCATGCGTGTGGGCAC
GATGCTCATGTCGCAATGCTGCTGGTAGCTGCTAAGCTGCTGCAATCACGCAGGGATCATTTCA
ATGTACATACATACAACACCACCTAGTTTTTTTTAATTTAAAAAAGACCAATGTATAATACTCC
CTCCGCTTCATTTTAAGCGCTCCATCTTATTTGGAATTTTGTATGATTAGTATTTTTATTATTG
TTGTTAGATAATAAAATATGAATAGGAACTTTATACATGACTAATGTTTTTAATTTTTTTTTAA
AAAATTAAATAAAACGAATAATTTAAGTTGAACACCATGACTGCGCTTAATTGGGACAGAGGAA
GTAGTACTAGTTTAATTTCAAAATGCAAGCTGATCACTATGGAGATTAGAGAAATAAAAACAGT
CCTGTCACTACAAAATAATTAGGGGAAGGTGAAGCTTGTGTTCCAACCGGCGGAGGGGGGCGCC
GGCGGGTACCATGTGCTCAAGGAAGGCGTTCTGGACGACACGCAGACCATCTTCGCCGTGCACG
TCGCCACGGATTTGCCGGCGGGCGTAGTGGGCTCCAGGCCAGGTCCGTTCCTCGCCGGCTCGGC
TCGCTTCACGGCGACCATCACCGGTAAAGGCGGCCACGCGGCGGAGCCCCACCTCGCCGTTGAT
CCCATCGTGGCTGCCTCTTCCGCCGTCCTCAGCCTCCAGCAGATTGTTGCTCGCGAGACCAATC
CACTCCAAGGCGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.349440145
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015