Plant Circular RNA Database

Detail information of Os06g0367100_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os06g0367100_circ_g.8
					
						ID in PlantcircBase
						osa_circ_030808
					
						Alias
						Os06circ09637/Os_ciR1734
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 15362456-15364347  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os06g0367100						
					
						Parent gene annotation
						
							Glycoside hydrolase, subgroup, catalytic core domain containing 
protein. (Os06t0367100-01);Similar to starch branching enzyme II
I. (Os06t0367100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0367100_circ_g.5 Os06g0367100_circ_g.6 Os06g0367100_circ_g.7 						
					
						Support reads
						2/10/3
					
						Tissues
						leaf/root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0367100-02:4
Os06t0367100-01:4

General Information
CircRNA Name	Os06g0367100_circ_g.8
ID in PlantcircBase	osa_circ_030808
Alias	Os06circ09637/Os_ciR1734
Organism	Oryza sativa
Position	chr6: 15362456-15364347 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene	Os06g0367100
Parent gene annotation	Glycoside hydrolase, subgroup, catalytic core domain containing protein. (Os06t0367100-01);Similar to starch branching enzyme II I. (Os06t0367100-02)
Parent gene strand	+
Alternative splicing	Os06g0367100_circ_g.5 Os06g0367100_circ_g.6 Os06g0367100_circ_g.7
Support reads	2/10/3
Tissues	leaf/root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0367100-02:4 Os06t0367100-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTGTTGATAGACCAAGCAATTCGGGTCCTCAGAAGACGGAACTTCTCTGTTAATATCTGAACT
CTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGatcatatattttactagaggacctttcc
tttttgttttcaatttcaatcctgacgcctcctatcagctctattctgttggtgtggatgaagc
tggtgaat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 395
Transcript exons: 15362456-15362560,15363847-15363932,15364035-15364089,15
364199-15364347
ATCATATATTTTACTAGAGGACCTTTCCTTTTTGTTTTCAATTTCAATCCTGACGCCTCCTATC
AGCTCTATTCTGTTGGTGTGGATGAAGCTGGTGAATATCAGCTTATATTGAACACAGATGAAAC
TAAATATGGTGGACGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGACAATAGG
GTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGCTCAGGTATTCAAGT
TGGTCCGAATTTTGAGAATTTAGATTCTCAAGGATGAGCATTGTTGATAGACCAAGCAATTCGG
GTCCTCAGAAGACGGAACTTCTCTGTTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGG
CAAAAACTGAG
						
					

						Genomic sequence
						
							ATCATATATTTTACTAGAGGACCTTTCCTTTTTGTTTTCAATTTCAATCCTGACGCCTCCTATC
AGCTCTATTCTGTTGGTGTGGATGAAGCTGGTGAATATCAGGTAACTAATGCTGTTTGTATGAA
CTTATTCTTTTGTAAATATGCAAGTGGCAGGCACATATAAAAATGTTGGAGCACCTGACACTTT
GATAAATAAAATGAATATGTAAAAATGTAAAAACTACTCGTAGTGATATTTTTACCAAAATACT
CTCTTTTTTTTTACCAAAATACTGCAGGTGAATTTCTACTTTTGTTTCTCCTCACTAGTTTTCG
GTTTAAAAATGTATTTTTTTTCCTCGAAAAAGCAGGAGAGCTGCATTTCATTTCACTAAGGGGA
AGAAAAAAACAATACAAAAACACAACACAAAGAAAAGCAAAAAAAAAAAAAAAAATTACAAAGT
AGGAGTACCCGAGCCCTCCTACCGAGACCCACACATACTAGACTACCCGGGGAACTTAGTTGCC
TAGGTTAGCCGTCCCACTCAGGAGCTTTTGAAGGCAAGAAGCTCCAGCAACACCCCAAAGATGG
CCCTCGTTTTCTATCACTTGCAAGACTGTTGCTACTCTAGGATTGGCGTCGTTGAAAATGCAGT
CGTTGCGGTGCTTCCAAATCTCCCAAGCTAGTAAGGTTACCAAGGACTTGATCCCTTTCCTCAC
CTCCTTCAGCCGGTTCTTGGTTGCTTGGCTCCACCACCTCAGAAAGCGGTCGGTAGAGGGCTGA
GGCGCAGCCTCGGCTAACCCTAGTCTCAAGAAGATTGCCATCCAAACTTGGCGAGAAAAAACAC
AAGAGATCAAAATGTGTTGGATGGATTCTTCACTTTGATCACAAAGGGGACAGATCACTGAGTG
TTGCAGCCCATTTCAAAAATGTAATTACATAGGGTGACAAGAGAAACTCTATCAACTCTTAATT
TTCTACTTCTTGTACTTCTTGGTTTTGTGCTTCATATTTTTTGTTATTTGCACCCAAATGATAA
TTTGCTGTTTACATTTGTCAGTTGAAACTAATTGACATGGGATAGAAGTGTGTGAAAGGACTAA
ATGCTTATAATCTAGGCTTGATGCATACATCAGAAAACTTTGCCATGATAGTTAATGACTTGAT
GCTTTAAATCCTGAACAGTTTGTTTCATGCCTCGAGAAAATCTTGAAATTTTTATTAGCTCATT
ACTAATGCTGAGAATAAGAACAACTATTAGATTCTTGAAGTACTTGAGTCTGAATTTATTGAAC
AATTGCGGGTGTGGATTTTCAGAACCAGCAATGGCATGTATTTTATATCTGTTTGCTCTTTAGA
GTTGTGTTCCCAGCACTGAAGTTATTGTGCTTCTATCATTTGGCCAGCTTATATTGAACACAGA
TGAAACTAAATATGGTGGACGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGAC
AATAGGTGCTGTTTTTCAGTTTTCATATGATATACATTGTGAGTTTATTATTTTATCTGGAGGT
ATCCATATTTTGCAATCAAATAAGCATTGTTACTTTCATATAGGGTTGGTGGTTGCCGCAACTC
CTTGGAATTGACATTACCATCTAGGAGTGCTCAGGTGGGTGGGTGTAAAGATATGTGATGCCAG
AACTCCTTGGAGTTGGTTGTTGCCACAGCTCCATTACAACAGATATGCTTCTCTTTTAAAAGAA
TACACACGCTTGCAGGTATTCAAGTTGGTCCGAATTTTGAGAATTTAGATTCTCAAGGATGAGC
ATTGTTGATAGACCAAGCAATTCGGGTCCTCAGAAGACGGAACTTCTCTGTTAATATCTGAACT
CTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG
						
					

			
		

Sequences
Splice junction sequence	ATTGTTGATAGACCAAGCAATTCGGGTCCTCAGAAGACGGAACTTCTCTGTTAATATCTGAACT CTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGatcatatattttactagaggacctttcc tttttgttttcaatttcaatcctgacgcctcctatcagctctattctgttggtgtggatgaagc tggtgaat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 395 Transcript exons: 15362456-15362560,15363847-15363932,15364035-15364089,15 364199-15364347 ATCATATATTTTACTAGAGGACCTTTCCTTTTTGTTTTCAATTTCAATCCTGACGCCTCCTATC AGCTCTATTCTGTTGGTGTGGATGAAGCTGGTGAATATCAGCTTATATTGAACACAGATGAAAC TAAATATGGTGGACGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGACAATAGG GTTGGTGGTTGCCGCAACTCCTTGGAATTGACATTACCATCTAGGAGTGCTCAGGTATTCAAGT TGGTCCGAATTTTGAGAATTTAGATTCTCAAGGATGAGCATTGTTGATAGACCAAGCAATTCGG GTCCTCAGAAGACGGAACTTCTCTGTTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGG CAAAAACTGAG
Genomic sequence	ATCATATATTTTACTAGAGGACCTTTCCTTTTTGTTTTCAATTTCAATCCTGACGCCTCCTATC AGCTCTATTCTGTTGGTGTGGATGAAGCTGGTGAATATCAGGTAACTAATGCTGTTTGTATGAA CTTATTCTTTTGTAAATATGCAAGTGGCAGGCACATATAAAAATGTTGGAGCACCTGACACTTT GATAAATAAAATGAATATGTAAAAATGTAAAAACTACTCGTAGTGATATTTTTACCAAAATACT CTCTTTTTTTTTACCAAAATACTGCAGGTGAATTTCTACTTTTGTTTCTCCTCACTAGTTTTCG GTTTAAAAATGTATTTTTTTTCCTCGAAAAAGCAGGAGAGCTGCATTTCATTTCACTAAGGGGA AGAAAAAAACAATACAAAAACACAACACAAAGAAAAGCAAAAAAAAAAAAAAAAATTACAAAGT AGGAGTACCCGAGCCCTCCTACCGAGACCCACACATACTAGACTACCCGGGGAACTTAGTTGCC TAGGTTAGCCGTCCCACTCAGGAGCTTTTGAAGGCAAGAAGCTCCAGCAACACCCCAAAGATGG CCCTCGTTTTCTATCACTTGCAAGACTGTTGCTACTCTAGGATTGGCGTCGTTGAAAATGCAGT CGTTGCGGTGCTTCCAAATCTCCCAAGCTAGTAAGGTTACCAAGGACTTGATCCCTTTCCTCAC CTCCTTCAGCCGGTTCTTGGTTGCTTGGCTCCACCACCTCAGAAAGCGGTCGGTAGAGGGCTGA GGCGCAGCCTCGGCTAACCCTAGTCTCAAGAAGATTGCCATCCAAACTTGGCGAGAAAAAACAC AAGAGATCAAAATGTGTTGGATGGATTCTTCACTTTGATCACAAAGGGGACAGATCACTGAGTG TTGCAGCCCATTTCAAAAATGTAATTACATAGGGTGACAAGAGAAACTCTATCAACTCTTAATT TTCTACTTCTTGTACTTCTTGGTTTTGTGCTTCATATTTTTTGTTATTTGCACCCAAATGATAA TTTGCTGTTTACATTTGTCAGTTGAAACTAATTGACATGGGATAGAAGTGTGTGAAAGGACTAA ATGCTTATAATCTAGGCTTGATGCATACATCAGAAAACTTTGCCATGATAGTTAATGACTTGAT GCTTTAAATCCTGAACAGTTTGTTTCATGCCTCGAGAAAATCTTGAAATTTTTATTAGCTCATT ACTAATGCTGAGAATAAGAACAACTATTAGATTCTTGAAGTACTTGAGTCTGAATTTATTGAAC AATTGCGGGTGTGGATTTTCAGAACCAGCAATGGCATGTATTTTATATCTGTTTGCTCTTTAGA GTTGTGTTCCCAGCACTGAAGTTATTGTGCTTCTATCATTTGGCCAGCTTATATTGAACACAGA TGAAACTAAATATGGTGGACGTGGGGAGCTGACGAGCAATCAATATATGAAAAGAACCAGTGAC AATAGGTGCTGTTTTTCAGTTTTCATATGATATACATTGTGAGTTTATTATTTTATCTGGAGGT ATCCATATTTTGCAATCAAATAAGCATTGTTACTTTCATATAGGGTTGGTGGTTGCCGCAACTC CTTGGAATTGACATTACCATCTAGGAGTGCTCAGGTGGGTGGGTGTAAAGATATGTGATGCCAG AACTCCTTGGAGTTGGTTGTTGCCACAGCTCCATTACAACAGATATGCTTCTCTTTTAAAAGAA TACACACGCTTGCAGGTATTCAAGTTGGTCCGAATTTTGAGAATTTAGATTCTCAAGGATGAGC ATTGTTGATAGACCAAGCAATTCGGGTCCTCAGAAGACGGAACTTCTCTGTTAATATCTGAACT CTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_008317* osi_circ_019057 						
					
						PMCS
						0.325736416

Conservation Information
Conserved circRNAs	osi_circ_008317* osi_circ_019057
PMCS	0.325736416

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15364334-15364228(+)
15362462-15364238(-)
						
						Potential amino acid sequence
						
							MAKTEIIYFTRGPFLFVFNFNPDASYQLYSVGVDEAGEYQLILNTDETKYGGRGELTSNQYMKR
TSDNRVGGCRNSLELTLPSRSAQVFKLVRILRI*(+)
MISVFAMRIFKFARVQILTEKFRLLRTRIAWSINNAHP*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15364334-15364228(+) 15362462-15364238(-)
Potential amino acid sequence	MAKTEIIYFTRGPFLFVFNFNPDASYQLYSVGVDEAGEYQLILNTDETKYGGRGELTSNQYMKR TSDNRVGGCRNSLELTLPSRSAQVFKLVRILRI(+) MISVFAMRIFKFARVQILTEKFRLLRTRIAWSINNAHP(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os06g0367100_circ_g.8

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