Detail information of ENSRNA049471535_circ_igg.1


General Information
CircRNA Name ENSRNA049471535_circ_igg.1
ID in PlantcircBase osa_circ_002679
Alias NA
Organism Oryza sativa
Position chr1: 24615785-24615990  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0618700_circ_ig.1 ENSRNA049471535_circ_igg.2 ENSRNA049471535_circ_igg.3 ENSRNA049471535_circ_igg.4 ENSRNA049471535_circ_igg.5 ENSRNA049471535_circ_igg.6 Os01g0618700_circ_ig.7 Os01g0618700_circ_ig.8 Os01g0618700_circ_ig.9 ENSRNA049471535_circ_g.1 ENSRNA049471535_circ_g.2 ENSRNA049471535_circ_g.3 ENSRNA049471535_circ_g.4 ENSRNA049471535_circ_igg.5 ENSRNA049471535_circ_g.6 ENSRNA049471535_circ_igg.7
Support reads 18
Tissues root
Exon boundary   No-No
Splicing signals   TC-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    Yes
PCR primers for FL    F: CCGGACTTCTTCTCCCAGAG
R: GGCAACACCCTCCAGAAACG
Sequences
Splice junction sequence   CGCCCTCCTCTTCGCGAGGGGGCAGAGACACGTGTGGAGCCCTTTGGGCGCGAGCCGAGATCAT
AATTGGCCAATTACACAGTTATTCACTTGATCCATCtcacgagcacatgacgaagtgagcgggc
tctttgtagccctggaaagtccccgggccctcaaccgcagagatgcggccgcggagacgcggaa
agtctcag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 206
Transcript exons: 24615785-24615990
TCACGAGCACATGACGAAGTGAGCGGGCTCTTTGTAGCCCTGGAAAGTCCCCGGGCCCTCAACC
GCAGAGATGCGGCCGCGGACACGCGGAAAGTCTCAGCGCTCGCGCCCTCCTCTTCGCGAGGGGG
CAGAGACACGTGTGGAGCCCTTTGGGCGCGAGCCGAGATCATAATTGGCCAATTACACAGTTAT
TCACTTGATCCATC

Transcript length: 206
Transcript exons: 24615785-24615990
TCACGAGCACATGACGAAGTGAGCGGGCTCTTTGTAGCCCTGGAAAGTCCCCGGGCCCTCAACC
GCAGAGATGCGGCCGCGGAGACGCGGAAAGTCTCAGCGCTCGCGCCCTCCTCTTCGCGAGGGGG
CAGAGACACGTGTGGAGCCCTTTGGGCGCGAGCCGAGATCATAATTGGCCAATTACACAGTTAT
TCACTTGATCCATC

Transcript length: 206
Transcript exons: 24615785-24615990
TCACGAGCACATGACGAAGTGAGCGGGCTCTTTGTAGCCCTGGAAAGTCCCCGGGCCCTCAACC
GCAGAGATGCGGCCGCGGAGACGCGGAAAGTCTCAGCGCTCGCGCCCTCCTCTTCGCGAGGGGG
CAGAGACACGTGTGGAGCCCTTTGGGCGCTAGCCGAGATCATAATTGGCCAATTACACAGTTAT
TCACTTGATCCATC

Transcript length: 206
Transcript exons: 24615785-24615990
TCCCGAGCACATGACGAAGTGAGCGGGCTCTTTGTAGCCCTGGAAAGTCCCCGGGCCCTCAACC
GCAGAGATGCGGCCGCGGAGACGCGGAAAGTCTCAGCGCTCGCGCCCTCCTCTTCGCGAGGGGG
CAGAGACACGTGTGGAGCCCTTTGGGCGCGAGCCGAGATCATAATTGGCCAATTACACAGTTAT
TCACTTGATCCATC

Genomic sequence TCACGAGCACATGACGAAGTGAGCGGGCTCTTTGTAGCCCTGGAAAGTCCCCGGGCCCTCAACC
GCAGAGATGCGGCCGCGGAGACGCGGAAAGTCTCAGCGCTCGCGCCCTCCTCTTCGCGAGGGGG
CAGAGACACGTGTGGAGCCCTTTGGGCGCGAGCCGAGATCATAATTGGCCAATTACACAGTTAT
TCACTTGATCCATC
Conservation Information
Conserved circRNAs NA
PMCS 0.804264222
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016