Detail information of BGIOSGA013884_circ_g.3


General Information
CircRNA Name BGIOSGA013884_circ_g.3
ID in PlantcircBase osi_circ_013853
Alias Chr03:38038149_38038493(MH63RS2), Chr03:37885851_37886195(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 39410352-39410696  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA013884
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013884_circ_g.1 BGIOSGA013884_circ_g.2 BGIOSGA013884_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA013884-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGATTTATCTGTTATTGCATTGCACCTCTGAGGCAGCATTTATGTTACAGGTTGGAGATGAG
GATTTAATTGAAAAATTTAGCAAAAGGACTGTAAAGgttttgtgtttgatggtgagccacctga
catgaagaaaaaggaactggcaaaaaggtatactctgaatagtgcctttgctttgattgtttct
tgtgagtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTTGTGTTTGATGGTGAGCCACCTGACATGAAGAAAAAGGAACTGGCAAAAAGGTATACTCT
GAATAGTGCCTTTGCTTTGATTGTTTCTTGTGAGTGTCAGTATTTTTATTTCCTATGTTTACCA
CTCTTTAGGTCTTTGAAGAGAGATGGTTCTTCCGAAGATCTAAATAGAGCTATTGAGGTCATCT
GATCCTAACCGTAGTACTATTGCCTCCTTCTTATTGTACCTTTTTACTTTTGGGGTGATTTATC
TGTTATTGCATTGCACCTCTGAGGCAGCATTTATGTTACAGGTTGGAGATGAGGATTTAATTGA
AAAATTTAGCAAAAGGACTGTAAAG
Conservation Information
Conserved circRNAs osa_circ_022599
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021