Detail information of BGIOSGA013884_circ_g.2


General Information
CircRNA Name BGIOSGA013884_circ_g.2
ID in PlantcircBase osi_circ_013852
Alias Chr03:38038122_38038574(MH63RS2), Chr03:37885824_37886276(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 39410325-39410777  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, find_circ, find_circ
Parent gene BGIOSGA013884
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013884_circ_g.1 BGIOSGA013884_circ_g.3 BGIOSGA013884_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA013884-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGCAAAAGGACTGTAAAGGTAATTACCTACGTTTGGGGGAAGTGAGCCAATCAAAAGTTTTTA
CAGTAACTTTAGGAAATACTTCCTCCGTTTCACAATggaactaaatgctaaaatttcataccag
ttttgtgtttgatggtgagccacctgacatgaagaaaaaggaactggcaaaaaggtatactctg
aatagtgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAACTAAATGCTAAAATTTCATACCAGTTTTGTGTTTGATGGTGAGCCACCTGACATGAAGAA
AAAGGAACTGGCAAAAAGGTATACTCTGAATAGTGCCTTTGCTTTGATTGTTTCTTGTGAGTGT
CAGTATTTTTATTTCCTATGTTTACCACTCTTTAGGTCTTTGAAGAGAGATGGTTCTTCCGAAG
ATCTAAATAGAGCTATTGAGGTCATCTGATCCTAACCGTAGTACTATTGCCTCCTTCTTATTGT
ACCTTTTTACTTTTGGGGTGATTTATCTGTTATTGCATTGCACCTCTGAGGCAGCATTTATGTT
ACAGGTTGGAGATGAGGATTTAATTGAAAAATTTAGCAAAAGGACTGTAAAGGTAATTACCTAC
GTTTGGGGGAAGTGAGCCAATCAAAAGTTTTTACAGTAACTTTAGGAAATACTTCCTCCGTTTC
ACAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021