Detail information of BGIOSGA016540_circ_g.1


General Information
CircRNA Name BGIOSGA016540_circ_g.1
ID in PlantcircBase osi_circ_014426
Alias Chr04:23468558_23470078(MH63RS2), Chr04:23440031_23441551(ZS97RS2), Chr04:23468558_23470078(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 21125782-21127302  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA016540
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016540_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA016540-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATTTCTTCAATGTCGCAGGAACATCTGCTGGTGTTGGTTTTGCCATCCCGTCATCAACTGTT
CTGAAAATAGCTCCTCAGTTAATTCAGTTTGGAAAAggtggatgctcctacagatctgttgaag
ccaattaacgtgggacaatcttcagctctaagagttggtcaacagtgtttagcaattggaaatc
catttggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGGATGCTCCTACAGATCTGTTGAAGCCAATTAACGTGGGACAATCTTCAGCTCTAAGAGTT
GGTCAACAGTGTTTAGCAATTGGAAATCCATTTGGCTTTGACCATGCTCTAACTGTTGGTGTCA
TCAGTGGTTTAAATCGAGACATTTTCAGTCAAGCTGGAGTAACAATTGGAGGTGGAATTCAAAC
AGATGCAGCTATTAACCCTGGGAACAGGTTTGTAGATATGTTTCTTTAATGATTTATCAACTGA
TTACCCTTTTCTGGTCTCAGAACCCAACCTGGAAACTACCATTAGTTGTACTGGTTTACATCTG
TATATTACTTACTGACAAGCATAAACACTTTTGTCACTAGTTACTTGATGGCTATACTGTATTA
CTGTTTATGGTTTCTACTATGCACAAAATGATAGTACTTGCCTATAACAGTGCAAAACAGTTGA
CTCAGGACACAGAAGAGGAAGTATTTTACTTCTTACTTTCTTGAGTTTCTAGCATCGCATCTAA
AGTCAGGACACATAGATTGGGGCTAAATTGCAGCTCTGGCAGTTGGCATAGTGGTAATATTTGT
TGCTACCAGTTTACTATATTAGGGTAGAATTTGATCATATTTGTGGTCAAAATCAGCTTGACCA
TGTATGCCCTCGTCCTTGAAGTGATTTAGTATGCATTACCTGTACTCTGGGGCAATGAACATCT
AGGGTTAAGGATCATGTTGTAAGTAGTGGTTTATACAATATGTGTTGGATATTTATGTTTCTGA
AAATGTATTATAGAGGGTTTTACTAAGCATGTATACTGATGTATGTCCATGCAGTGGTGGTCCA
TTGCTGGATTCGAAGGGGCATATGATTGGTATTAATACAGCAATTTTCACACAGACAGGTTAGA
TTATCTCAACATGAAATGTATTAATCAAATAGCACTGAATTGTTTCATGCTGATTTGCGGAGGT
AACATTAGTAGATGTTCATGCTTTCTCTACAGATGTCAAGCACTGCACTTAGCATTCAAAAGAG
AATATGTCCAATTAGTAAAAGTTCATCCTCAATAAACTAAAATGATCATAACACATTGCAAAGC
TTGCCTCGATCCCTGTACATCAGTTCATTTCCCAGAGTACTCTGGTTGATGGCACACTTTGAGT
GACTTTCTATTTTGATGGCATGATTAGTGAGTGGTATCATCTATCATGTTTATATTCGGATTCA
CAGCATTCTTTGAAATTGTTATTTGCTTGCATCCTAATGGGCTGTAAGAATTGACATAATTGAT
TATAGTTGACTCAAAATCACCTCCTTGAAGCTGTGCATTAGACCATTTGTTTTTGTTGTTGATT
TGGTAGAGCATAAATCAGATATTCAGATCCAACTATGTCCAATGTAACTTAAATTCCTATGTTA
GTCTGAGATTCCATTATTTCTTCAATGTCGCAGGAACATCTGCTGGTGTTGGTTTTGCCATCCC
GTCATCAACTGTTCTGAAAATAGCTCCTCAGTTAATTCAGTTTGGAAAA
Conservation Information
Conserved circRNAs osa_circ_024076
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021